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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G09820 | AT | Annotation by Michelle Graham. TAIR10: basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr4:6182067-6186261 FORWARD LENGTH=518 | SoyBase | E_val: 2.00E-103 | ISS |
| GO:0009718 | GO-bp | Annotation by Michelle Graham. GO Biological Process: anthocyanin-containing compound biosynthetic process | SoyBase | N/A | ISS |
| GO:0009744 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to sucrose stimulus | SoyBase | N/A | ISS |
| GO:0009962 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of flavonoid biosynthetic process | SoyBase | N/A | ISS |
| GO:0010026 | GO-bp | Annotation by Michelle Graham. GO Biological Process: trichome differentiation | SoyBase | N/A | ISS |
| GO:0010224 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to UV-B | SoyBase | N/A | ISS |
| GO:2000029 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of proanthocyanidin biosynthetic process | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0003677 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: DNA binding | SoyBase | N/A | ISS |
| GO:0003700 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity | SoyBase | N/A | ISS |
| GO:0005515 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding | SoyBase | N/A | ISS |
| PTHR11514 | Panther | MYC | JGI | ISS | |
| PTHR11514:SF8 | Panther | C-MYC II PROTO-ONCOGENE | JGI | ISS | |
| PTHR12565 | Panther | STEROL REGULATORY ELEMENT-BINDING PROTEIN | JGI | ISS | |
| PTHR12565:SF7 | Panther | CENTROMERE-BINDING PROTEIN 1, CBP-1 | JGI | ISS | |
| PF00010 | PFAM | Helix-loop-helix DNA-binding domain | JGI | ISS | |
| UniRef100_E3SXU4 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: BHLH n=1 Tax=Pisum sativum RepID=E3SXU4_PEA | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000233C678 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233C678 related cluster n=1 Tax=unknown RepID=UPI000233C678 | SoyBase | E_val: 0 | ISS |
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Glyma10g03140 not represented in the dataset |
Glyma10g03140 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma02g16670 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.10g026000 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma10g03140.3 sequence type=transcript gene model=Glyma10g03140 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high TGTAAACACATAAAAATAATTTGTGTGAAATAAAATATTTTGCTTATTTAAATGAACCGTTTTGCAAACTTTCACATGCATGCATGTAAAGGAAGTTACAGAAGGTGTTTTTTCTTTTGGATTTATTGACTGACAATAAGGTTAATTGTTGATTAATTTATTTACTAACTTGTATTCCCTTTGGTTTCCTGTGGCAAAAATTTCCACGGCTAGAGTGCTCGCATACAGACTGTGGTGTGCATTCCTTTATTGGACGGTGTGGTTGAGTTTGGCACAATGGATAAGGTTCAAGAAGACCTCAGCTTCATCCAACACGTGGAGACCTTCTTCATAGACCACCTCAACCCTTTGCCACCGAAGCCTGCCTTGTCGGAGCACTCAACCTCAAACCCCGCCTCCTCCTCTGAACACATCCCCGCCGTCATGTATACCGTCGTGGATCCACTTGCCGCCAATCCCAACCTAAATGATGACATGGATGAGGATATTGAGGAGGAAGAGGAGGAGGAAGAGGAAGATGAGGAGCCGGAATCTGGTTCCGAAGACAAAGCCGGATACGGCATCGCTCGCCAAACTCCGACACCAGCCATGGCGGCAGAGCCCAGCGAGCTGATACAACTAGAGATGCCGGAGGACATCCGGCTTGGGTCTCCAAACGATGGGTCAAACAACTTAGACTCAGATTTTCACTTGCTGGCGGTGAGTCAGGGTGTTAACACAGCGGGGCAGGCTGAGTCAACTCGGAGGTGGGGCCTGAGTCAAAACCCCATGCAAGTTCAACTACCGACTTCAGCCCTTCATCCATTGGAAGACTTGACACAAGAGGACACTCACTACTCTCAAACAGTGTCCAACATCCTCCAAAACCAGTTCACACGGTGGCCAGCCTCACCCTCCTCCGTTGGATACGTCTCATACTCCACGCAATCAGCATTCGCAAAATGGAGCAGCCGCGCCAGCCACCACCACTTCCACCCGGCGGCGGCGGCGGCGGCGGACGGCACCAGCCAGTGCATCCTCAAGTACATCCTCTTCACGGTCCCGTACCTCCACGCCAAGAACCCCGGCGAGAGTTCTCCCCAAACCACCGCCGCGGACACCAAACTCCGCGGCAAGGGAGCGCCGCAGGAGGAGCTCAGCGCCAACCACGTGCTGGCCGAGCGCCGCCGCCGCGAGAAGCTGAACGAGAGGTTCATAATCCTGCGGTCGCTGGTCCCCTTCGTGACCAAAATGGACAAGGCGTCGATATTGGGAGACACCATCGAGTACGTGAAGCAGTTGCGGCGGAAGATCCAGGAGCTCGAGGCGCGTAACCGCCAGATGACGGAGGCGGAACAACGTTCCAAGCTCCCAGAGATAGCAGTTCAGAGAACAAGTAGCAGTTCGAGCAAGGAGCAACAGAGGAGTGGGGTGACAATGACGGAGAAGAGGAAGGTGAGGATCGTGGAAGGGGTGGTGGCGAAGGCGAAGGCGGTGGAGGCTGAGGCCACCACGTCGGTGCAAGTTTCGATCATAGAAAGCGACGCACTGTTGGAGATCGAGTGTCGTCACAAAGAAGGGTTGCTTCTGGACGTGATGCAGATGCTGAGGGAGGTGAGGATAGAAGTTATAGGGGTGCAGTCGTCGCTTAACAATGGGGTGTTCGTGGCGGAGTTGAGGGCTAAGGTGAAGGAACATGCAAACGGCAAGAAGGTCAGCATTGTGGAAGTGAAGAGGGCACTTAACCAAATTATACCCCATGCTGTTGACTAAAGAGGGGGTGCATGCTTGAATTTTCAGGGCTTGACTTTATGGATGAATATTCCAAGTAGAATTAACTGGCTATTTCTCTTGCAATCCACACTATTTGTACTTCCAATCACAATGGCTTAATGTGTATCTATGATTCAAGCCAGGTGTGAAGTCTAGTCAATAAACCCATAATTAAGTATTGTCACGAAGGCTAGCTGATGAAATAGAAAGAAGCTAGGGAACATTAGTGTTGTCTTTAGAGTTTTAGCAGATTAATTAAAATAGTTTACATTCTATAATTTTAGTGTAGTAATGATGTAATGATCGATGTAGTTGAGAACAATTGAAATTAATATAGAAAAAAAAGTATGTATAATTACTTTATATTTAGTGTATGGTGCTTGCGAACA
>Glyma10g03140.2 sequence type=CDS gene model=Glyma10g03140 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCTGCGCCACTAGGCACTAGCCTTCAAAGCATGTTGCAGGCTGCGGTGCAATCTGTTCAGTGGACTTATAGTCTCTTCTGGCAACTTTGTCCACAACAAGGGATTCTGGTTTGGGGTGATGGTTACTACAATGGAGCAATTAAAACACGGAAGACGGTGCAACCAATGGAGGTGAGTGCTGAAGAGGCTTCTCTCCAAAGAAGCCAGCAACTTAGAGAACTCTATGAATCACTGTCCGCCGGAGAGACAAACCCGCCTTGTCGCCGGCCTTGTGCCGCCTTGTCGCCTGAGGACTTAACAGAATCCGAATGGTTCTATTTGATGTGTGTCTCATTCTCCTTTCCACCTGGTGTTGGGTTGCCTGGAAAGGCATATGCGAGGAGGCAGCATCTATGGCTCACGGGTGCAAATGAGGTGGACAGCAAAACATTTTCACGAGCTATTCTAGCCAAGAGTGCTCGCATACAGACTGTGGTGTGCATTCCTTTATTGGACGGTGTGGTTGAGTTTGGCACAATGGATAAGGTTCAAGAAGACCTCAGCTTCATCCAACACGTGGAGACCTTCTTCATAGACCACCTCAACCCTTTGCCACCGAAGCCTGCCTTGTCGGAGCACTCAACCTCAAACCCCGCCTCCTCCTCTGAACACATCCCCGCCGTCATGTATACCGTCGTGGATCCACTTGCCGCCAATCCCAACCTAAATGATGACATGGATGAGGATATTGAGGAGGAAGAGGAGGAGGAAGAGGAAGATGAGGAGCCGGAATCTGGTTCCGAAGACAAAGCCGGATACGGCATCGCTCGCCAAACTCCGACACCAGCCATGGCGGCAGAGCCCAGCGAGCTGATACAACTAGAGATGCCGGAGGACATCCGGCTTGGGTCTCCAAACGATGGGTCAAACAACTTAGACTCAGATTTTCACTTGCTGGCGGTGAGTCAGGGTGTTAACACAGCGGGGCAGGCTGAGTCAACTCGGAGGTGGGGCCTGAGTCAAAACCCCATGCAAGTTCAACTACCGACTTCAGCCCTTCATCCATTGGAAGACTTGACACAAGAGGACACTCACTACTCTCAAACAGTGTCCAACATCCTCCAAAACCAGTTCACACGGTGGCCAGCCTCACCCTCCTCCGTTGGATACGTCTCATACTCCACGCAATCAGCATTCGCAAAATGGAGCAGCCGCGCCAGCCACCACCACTTCCACCCGGCGGCGGCGGCGGCGGCGGACGGCACCAGCCAGTGCATCCTCAAGTACATCCTCTTCACGGTCCCGTACCTCCACGCCAAGAACCCCGGCGAGAGTTCTCCCCAAACCACCGCCGCGGACACCAAACTCCGCGGCAAGGGAGCGCCGCAGGAGGAGCTCAGCGCCAACCACGTGCTGGCCGAGCGCCGCCGCCGCGAGAAGCTGAACGAGAGGTTCATAATCCTGCGGTCGCTGGTCCCCTTCGTGACCAAAATGGACAAGGCGTCGATATTGGGAGACACCATCGAGTACGTGAAGCAGTTGCGGCGGAAGATCCAGGAGCTCGAGGCGCGTAACCGCCAGATGACGGAGGCGGAACAACGTTCCAAGCTCCCAGAGATAGCAGTTCAGAGAACAAGTAGCAGTTCGAGCAAGGAGCAACAGAGGAGTGGGGTGACAATGACGGAGAAGAGGAAGGTGAGGATCGTGGAAGGGGTGGTGGCGAAGGCGAAGGCGGTGGAGGCTGAGGCCACCACGTCGGTGCAAGTTTCGATCATAGAAAGCGACGCACTGTTGGAGATCGAGTGTCGTCACAAAGAAGGGTTGCTTCTGGACGTGATGCAGATGCTGAGGGAGGTGAGGATAGAAGTTATAGGGGTGCAGTCGTCGCTTAACAATGGGGTGTTCGTGGCGGAGTTGAGGGCTAAGGTGAAGGAACATGCAAACGGCAAGAAGGTCAGCATTGTGGAAGTGAAGAGGGCACTTAACCAAATTATACCCCATGCTGTTGACTAA >Glyma10g03140.3 sequence type=CDS gene model=Glyma10g03140 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGATAAGGTTCAAGAAGACCTCAGCTTCATCCAACACGTGGAGACCTTCTTCATAGACCACCTCAACCCTTTGCCACCGAAGCCTGCCTTGTCGGAGCACTCAACCTCAAACCCCGCCTCCTCCTCTGAACACATCCCCGCCGTCATGTATACCGTCGTGGATCCACTTGCCGCCAATCCCAACCTAAATGATGACATGGATGAGGATATTGAGGAGGAAGAGGAGGAGGAAGAGGAAGATGAGGAGCCGGAATCTGGTTCCGAAGACAAAGCCGGATACGGCATCGCTCGCCAAACTCCGACACCAGCCATGGCGGCAGAGCCCAGCGAGCTGATACAACTAGAGATGCCGGAGGACATCCGGCTTGGGTCTCCAAACGATGGGTCAAACAACTTAGACTCAGATTTTCACTTGCTGGCGGTGAGTCAGGGTGTTAACACAGCGGGGCAGGCTGAGTCAACTCGGAGGTGGGGCCTGAGTCAAAACCCCATGCAAGTTCAACTACCGACTTCAGCCCTTCATCCATTGGAAGACTTGACACAAGAGGACACTCACTACTCTCAAACAGTGTCCAACATCCTCCAAAACCAGTTCACACGGTGGCCAGCCTCACCCTCCTCCGTTGGATACGTCTCATACTCCACGCAATCAGCATTCGCAAAATGGAGCAGCCGCGCCAGCCACCACCACTTCCACCCGGCGGCGGCGGCGGCGGCGGACGGCACCAGCCAGTGCATCCTCAAGTACATCCTCTTCACGGTCCCGTACCTCCACGCCAAGAACCCCGGCGAGAGTTCTCCCCAAACCACCGCCGCGGACACCAAACTCCGCGGCAAGGGAGCGCCGCAGGAGGAGCTCAGCGCCAACCACGTGCTGGCCGAGCGCCGCCGCCGCGAGAAGCTGAACGAGAGGTTCATAATCCTGCGGTCGCTGGTCCCCTTCGTGACCAAAATGGACAAGGCGTCGATATTGGGAGACACCATCGAGTACGTGAAGCAGTTGCGGCGGAAGATCCAGGAGCTCGAGGCGCGTAACCGCCAGATGACGGAGGCGGAACAACGTTCCAAGCTCCCAGAGATAGCAGTTCAGAGAACAAGTAGCAGTTCGAGCAAGGAGCAACAGAGGAGTGGGGTGACAATGACGGAGAAGAGGAAGGTGAGGATCGTGGAAGGGGTGGTGGCGAAGGCGAAGGCGGTGGAGGCTGAGGCCACCACGTCGGTGCAAGTTTCGATCATAGAAAGCGACGCACTGTTGGAGATCGAGTGTCGTCACAAAGAAGGGTTGCTTCTGGACGTGATGCAGATGCTGAGGGAGGTGAGGATAGAAGTTATAGGGGTGCAGTCGTCGCTTAACAATGGGGTGTTCGTGGCGGAGTTGAGGGCTAAGGTGAAGGAACATGCAAACGGCAAGAAGGTCAGCATTGTGGAAGTGAAGAGGGCACTTAACCAAATTATACCCCATGCTGTTGACTAA
>Glyma10g03140.2 sequence type=predicted peptide gene model=Glyma10g03140 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAAPLGTSLQSMLQAAVQSVQWTYSLFWQLCPQQGILVWGDGYYNGAIKTRKTVQPMEVSAEEASLQRSQQLRELYESLSAGETNPPCRRPCAALSPEDLTESEWFYLMCVSFSFPPGVGLPGKAYARRQHLWLTGANEVDSKTFSRAILAKSARIQTVVCIPLLDGVVEFGTMDKVQEDLSFIQHVETFFIDHLNPLPPKPALSEHSTSNPASSSEHIPAVMYTVVDPLAANPNLNDDMDEDIEEEEEEEEEDEEPESGSEDKAGYGIARQTPTPAMAAEPSELIQLEMPEDIRLGSPNDGSNNLDSDFHLLAVSQGVNTAGQAESTRRWGLSQNPMQVQLPTSALHPLEDLTQEDTHYSQTVSNILQNQFTRWPASPSSVGYVSYSTQSAFAKWSSRASHHHFHPAAAAAADGTSQCILKYILFTVPYLHAKNPGESSPQTTAADTKLRGKGAPQEELSANHVLAERRRREKLNERFIILRSLVPFVTKMDKASILGDTIEYVKQLRRKIQELEARNRQMTEAEQRSKLPEIAVQRTSSSSSKEQQRSGVTMTEKRKVRIVEGVVAKAKAVEAEATTSVQVSIIESDALLEIECRHKEGLLLDVMQMLREVRIEVIGVQSSLNNGVFVAELRAKVKEHANGKKVSIVEVKRALNQIIPHAVD* >Glyma10g03140.3 sequence type=predicted peptide gene model=Glyma10g03140 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MDKVQEDLSFIQHVETFFIDHLNPLPPKPALSEHSTSNPASSSEHIPAVMYTVVDPLAANPNLNDDMDEDIEEEEEEEEEDEEPESGSEDKAGYGIARQTPTPAMAAEPSELIQLEMPEDIRLGSPNDGSNNLDSDFHLLAVSQGVNTAGQAESTRRWGLSQNPMQVQLPTSALHPLEDLTQEDTHYSQTVSNILQNQFTRWPASPSSVGYVSYSTQSAFAKWSSRASHHHFHPAAAAAADGTSQCILKYILFTVPYLHAKNPGESSPQTTAADTKLRGKGAPQEELSANHVLAERRRREKLNERFIILRSLVPFVTKMDKASILGDTIEYVKQLRRKIQELEARNRQMTEAEQRSKLPEIAVQRTSSSSSKEQQRSGVTMTEKRKVRIVEGVVAKAKAVEAEATTSVQVSIIESDALLEIECRHKEGLLLDVMQMLREVRIEVIGVQSSLNNGVFVAELRAKVKEHANGKKVSIVEVKRALNQIIPHAVD*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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