Glyma10g03050 - SoyBase

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Report for Sequence Feature Glyma10g03050

Feature Type:	gene_model
Chromosome:	Gm10
Start:	2176654
stop:	2177100
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma10g03050

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G63095	AT	Annotation by Michelle Graham. TAIR10: Tetratricopeptide repeat (TPR)-like superfamily protein \| chr3:23315506-23316258 FORWARD LENGTH=250	SoyBase	E_val: 2.00E-16	ISS
UniRef100_G8A041	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: AAA ATPase containing von Willebrand factor type A n=1 Tax=Medicago truncatula RepID=G8A041_MEDTR	SoyBase	E_val: 1.00E-52	ISS
UniRef100_G8A041	UniRef	Annotation by Michelle Graham. Best UniRef hit: AAA ATPase containing von Willebrand factor type A n=1 Tax=Medicago truncatula RepID=G8A041_MEDTR	SoyBase	E_val: 1.00E-52	ISS

Expression Patterns of Glyma10g03050

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma10g03050

Paralog	Evidence	Comments
Glyma02g16766	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma10g03050 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.10g025200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma10g03050

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma10g03050

Limit To All Plant Sequences

>Glyma10g03050.2   sequence type=CDS   gene model=Glyma10g03050   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAGAGAGTCAAGATTTTCATTTTAATAACTCTAGCTCTGACATTTGTGGCATTTGTGCCAAAGATAGAGAGCCAGATCATGCCACCACTTATTCCTTTTCCACCACCATCTCTTCATCCACTTTGTTTATCCCAACTAGCACTAGTAAGCTATGCTTGTGCAATGTTGCCTCCAACCACAACACTACCACCTTCACCACTCACACCACCACCCTCTCCTTCATCCCCTGGTGATGATGAGGGACACGGGAATGACCAAAGCCAGGGTCACCACCAAACTTCTCAAGAAGAAAACTGTTGCCGGTGGGCTAGGGAAATGGACAACCAATGTGTGTGTGAATTCCTACTTCTATTGCCTCCCTTCCTTACTAGACCTTTGCATCAGTACTCAATCAGCATTGGAGAATCGTGTAATGTCACTTACTCGTGCGGTGGGCCAATATGA

Predicted protein sequences of Glyma10g03050

Limit To All Plant Sequences

>Glyma10g03050.2   sequence type=predicted peptide   gene model=Glyma10g03050   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKRVKIFILITLALTFVAFVPKIESQIMPPLIPFPPPSLHPLCLSQLALVSYACAMLPPTTTLPPSPLTPPPSPSSPGDDEGHGNDQSQGHHQTSQEENCCRWAREMDNQCVCEFLLLLPPFLTRPLHQYSISIGESCNVTYSCGGPI*

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