Glyma10g03030 - SoyBase

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Report for Sequence Feature Glyma10g03030

Feature Type:	gene_model
Chromosome:	Gm10
Start:	2167249
stop:	2172260
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma10g03030

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G02880	AT	Annotation by Michelle Graham. TAIR10: unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G03290.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). \| chr4:1275131-1277913 FORWARD LENGTH=552	SoyBase	E_val: 4.00E-93	ISS
GO:0006914	GO-bp	Annotation by Michelle Graham. GO Biological Process: autophagy	SoyBase	N/A	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
UniRef100_I1L822	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1L822_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q9ZVT0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: F15K9.11 protein n=1 Tax=Arabidopsis thaliana RepID=Q9ZVT0_ARATH	SoyBase	E_val: 2.00E-85	ISS

Expression Patterns of Glyma10g03030

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma10g03030

Paralog	Evidence	Comments
Glyma02g16783	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma10g03030 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.10g025000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma10g03030

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma10g03030

Limit To All Plant Sequences

>Glyma10g03030.4   sequence type=transcript   gene model=Glyma10g03030   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTCCATATTTCCACAGAATAGGAAATAGCGTAATTTACGTGTGCTCCTTTATTCAGTTCCTCTTCTCACACTGGTCAAGATAGTCTATCTTGATCATGGGTTTCAATTCTGTCTATAGAAACTTGCAGGAGATATTTCCGCAGGTTGATCCCAGGCTACTGAGGGCTGTAGCTATTGAACACCCAAAGGATGCTGATCTAGCAGCTGGAATAGTTCTTGCGGAAGTCATCCCGTTCATGTCCAAAAAACTACCTGCTGCAATTCCTCCACAGCACAATGACCATGGAGCCCCACTAGATGTTGAAGTTGAAAGTGAGGAAGAAGGCAATAGGTTGAGGCACTGTCAGCGTGTTGATGACGTAAATGTGGGGCCTTCCTCTACTTTGTCAAATGGCTGTAATTCAAAAGATGATACTGAAAAATTTCTTGGAATGGATGATATTAAGGAGCTAGATATTTTTCAGAATGCTGAAGATAACTTCATTGGGGAAACCTTGAACGAGATTGCTCAGGAGATGTCAAATGGCTTTATTCAGGAGGAAGATAATGAAAATTTTGAGAGACAACCTGTGGATTTTGATTGTGAAAATTTGATATCTTCAGCTGATGATTATGATGTCACCCCAAGTCACAGATTGGAAGAATGCGAAACTTACTTGATTGAGTTAGAAAGTTCTGAAGCTCAAGAAGTTTGTCATGTTCAAGGCGATACATTAAATTCTAAAGATAGTCTTCAATCAGAATTGGATGCTGGTTCTTCTACTGCTGGTGGCAATACTAGTGATGTTGAAAATGATAATGGTGCAAAGAGTGCAGGTAGCCAATATAGTCAAGTATCCAGGATTGATCTGCTTGAGGAAATCATTGATGAGGCAAAAACCAACAAGAAAACGTTGTTTTCATCAATGGAATCTCTTATCAACTTAATGAGAGAAGTGGAAGTTCAGGAGAAAGCTGCAGAGCAGGCTAATATGGAAGCTGCTACTGGAGGGTCTAATATTCTGGCCAGGATAGAAGAATACAAAACAATGCTGGTGCAAGCTAAAGAAGCAAATGACATGCATGCAGGAGAAGTTTATGGGGAAAAAGCAATTCTTGCAACTGAACTGAAGGAACTTCAATCACGCTTGCTCGGCTTGTCTGATGAAAGGGACAAGTCTCTTGCAATTCTTGATGAGATGCGCCACATTCTTGAAGAACGACTAGCTGCAGCAGAAGAATCAAGGAAAGCAGCTGAGCAACAAAAGCTGGAAAAGGAGGAATCTGCACGAAAGGCTCTTGTTGAACAGGAGAGACTGGTGGAGATGGTAGTACATGAATCACAAAGACTACAGCAGGAGGCAGAAGAGAATTCAAAGTTACAGGAATTCCTAATTGATCGTGGGCGGGTTGTTGATATGTTGCAAGGGGAAATCTCTGTTATTTGTCAGGATATTAAGCTTCTAAAAGAGAAATTTGATGCTAATCTTCCGTTGAGTAAATCCTTCACCTCAAGCCAGACTAGTTGCAAGTTAGCTTCATCAGGTTCTTCCCACAAAACATTGGCATCTGATGCGGGTTCTGACCATAGTGAGTCATCTGGAATACGTAAGACAAGCTGGACAACCTCAATTGAAAGCCTTTCTTCCAAGATTGGGCATGACGAGGAAAAATCCAAAGCTGATCACAATGCTCTTCTTGATGATGGGTGGGATATTTTTGAGAAAGATGCAGAACTGAATTCCGGAGTTTGCTGACTTTTTATTCTGCTGAGAGGGGGAAACATGGGGAGTTAATGCTAATGTTTATACAACAAAATAAACCTTAGAATCCTTCGATGATTTTTCTTTATGTTTCAGTAGCATACTAGCATGCATACAATTTTTATGTAGTCCTCTTGGGGAGTTAATGCTAATGTTTATACAACAAAATAAACCTTAGAATCCTTCGATGATTTTTCTTTATGTTTCAGTAGCATACTAAGTAGCATACTAGCATGCATACAATTTTTATGTAGTCCTCTTGAGTTTGGGTTCTCATTGTTTTCCAGATTTTGTATAGAAAACGTCACAGCAAATTACTTGATTTCTTCTTTCTCATCTGTAAATGGTGATTCATTTATCTTTATC

Coding sequences of Glyma10g03030

Limit To All Plant Sequences

>Glyma10g03030.3   sequence type=CDS   gene model=Glyma10g03030   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTTTCAATTCTGTCTATAGAAACTTGCAGGAGATATTTCCGCAGGTTGATCCCAGGCTACTGAGGGCTGTAGCTATTGAACACCCAAAGGATGCTGATCTAGCAGCTGGAATAGTTCTTGCGGAAGTCATCCCGTTCATGTCCAAAAAACTACCTGCTGCAATTCCTCCACAGCACAATGACCATGGAGCCCCACTAGATGTTGAAGTTGAAAGTGAGGAAGAAGGCAATAGGTTGAGGCACTGTCAGCGTGTTGATGACGTAAATGTGGGGCCTTCCTCTACTTTGTCAAATGGCTGTAATTCAAAAGATGATACTGAAAAATTTCTTGGAATGGATGATATTAAGGAGCTAGATATTTTTCAGAATGCTGAAGATAACTTCATTGGGGAAACCTTGAACGAGATTGCTCAGGAGATGTCAAATGGCTTTATTCAGGAGGAAGATAATGAAAATTTTGAGAGACAACCTGTGGATTTTGATTGTGAAAATTTGATATCTTCAGCTGATGATTATGATGTCACCCCAAGTCACAGATTGGAAGAATGCGAAACTTACTTGATTGAGTTAGAAAGTTCTGAAGCTCAAGAAGTTTGTCATGTTCAAGGCGATACATTAAATTCTAAAGATAGTCTTCAATCAGAATTGGATGCTGGTTCTTCTACTGCTGGTGGCAATACTAGTGATGTTGAAAATGATAATGGTGCAAAGAGTGCAGGTAGCCAATATAGTCAAGTATCCAGGATTGATCTGCTTGAGGAAATCATTGATGAGGCAAAAACCAACAAGAAAACGTTGTTTTCATCAATGGAATCTCTTATCAACTTAATGAGAGAAGTGGAAGTTCAGGAGAAAGCTGCAGAGCAGGCTAATATGGAAGCTGCTACTGGAGGGTCTAATATTCTGGCCAGGATAGAAGAATACAAAACAATGCTGGTGCAAGCTAAAGAAGCAAATGACATGCATGCAGGAGAAGTTTATGGGGAAAAAGCAATTCTTGCAACTGAACTGAAGGAACTTCAATCACGCTTGCTCGGCTTGTCTGATGAAAGGGACAAGTCTCTTGCAATTCTTGATGAGATGCGCCACATTCTTGAAGAACGACTAGCTGCAGCAGAAGAATCAAGGAAAGCAGCTGAGCAACAAAAGCTGGAAAAGGAGGAATCTGCACGAAAGGCTCTTGTTGAACAGGAGAGACTGGTGGAGATGGTAGTACATGAATCACAAAGACTACAGCAGGAGGCAGAAGAGAATTCAAAGTTACAGGAATTCCTAATTGATCGTGGGCGGGTTGTTGATATGTTGCAAGGGGAAATCTCTGTTATTTGTCAGGATATTAAGCTTCTAAAAGAGAAATTTGATGCTAATCTTCCGTTGAGTAAATCCTTCACCTCAAGCCAGACTAGTTGCAAGTTAGCTTCATCAGGTTCTTCCCACAAAACATTGGCATCTGATGCGGGTTCTGACCATAGTGAGTCATCTGGAATACGTAAGACAAGCTGGACAACCTCAATTGAAAGCCTTTCTTCCAAGATTGGGCATGACGAGGAAAAATCCAAAGCTGATCACAATGCTCTTCTTGATGATGGGTGGGATATTTTTGAGAAAGATGCAGAACTGAATTCCGGAGTTTGCTGA

>Glyma10g03030.4   sequence type=CDS   gene model=Glyma10g03030   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTTTCAATTCTGTCTATAGAAACTTGCAGGAGATATTTCCGCAGGTTGATCCCAGGCTACTGAGGGCTGTAGCTATTGAACACCCAAAGGATGCTGATCTAGCAGCTGGAATAGTTCTTGCGGAAGTCATCCCGTTCATGTCCAAAAAACTACCTGCTGCAATTCCTCCACAGCACAATGACCATGGAGCCCCACTAGATGTTGAAGTTGAAAGTGAGGAAGAAGGCAATAGGTTGAGGCACTGTCAGCGTGTTGATGACGTAAATGTGGGGCCTTCCTCTACTTTGTCAAATGGCTGTAATTCAAAAGATGATACTGAAAAATTTCTTGGAATGGATGATATTAAGGAGCTAGATATTTTTCAGAATGCTGAAGATAACTTCATTGGGGAAACCTTGAACGAGATTGCTCAGGAGATGTCAAATGGCTTTATTCAGGAGGAAGATAATGAAAATTTTGAGAGACAACCTGTGGATTTTGATTGTGAAAATTTGATATCTTCAGCTGATGATTATGATGTCACCCCAAGTCACAGATTGGAAGAATGCGAAACTTACTTGATTGAGTTAGAAAGTTCTGAAGCTCAAGAAGTTTGTCATGTTCAAGGCGATACATTAAATTCTAAAGATAGTCTTCAATCAGAATTGGATGCTGGTTCTTCTACTGCTGGTGGCAATACTAGTGATGTTGAAAATGATAATGGTGCAAAGAGTGCAGGTAGCCAATATAGTCAAGTATCCAGGATTGATCTGCTTGAGGAAATCATTGATGAGGCAAAAACCAACAAGAAAACGTTGTTTTCATCAATGGAATCTCTTATCAACTTAATGAGAGAAGTGGAAGTTCAGGAGAAAGCTGCAGAGCAGGCTAATATGGAAGCTGCTACTGGAGGGTCTAATATTCTGGCCAGGATAGAAGAATACAAAACAATGCTGGTGCAAGCTAAAGAAGCAAATGACATGCATGCAGGAGAAGTTTATGGGGAAAAAGCAATTCTTGCAACTGAACTGAAGGAACTTCAATCACGCTTGCTCGGCTTGTCTGATGAAAGGGACAAGTCTCTTGCAATTCTTGATGAGATGCGCCACATTCTTGAAGAACGACTAGCTGCAGCAGAAGAATCAAGGAAAGCAGCTGAGCAACAAAAGCTGGAAAAGGAGGAATCTGCACGAAAGGCTCTTGTTGAACAGGAGAGACTGGTGGAGATGGTAGTACATGAATCACAAAGACTACAGCAGGAGGCAGAAGAGAATTCAAAGTTACAGGAATTCCTAATTGATCGTGGGCGGGTTGTTGATATGTTGCAAGGGGAAATCTCTGTTATTTGTCAGGATATTAAGCTTCTAAAAGAGAAATTTGATGCTAATCTTCCGTTGAGTAAATCCTTCACCTCAAGCCAGACTAGTTGCAAGTTAGCTTCATCAGGTTCTTCCCACAAAACATTGGCATCTGATGCGGGTTCTGACCATAGTGAGTCATCTGGAATACGTAAGACAAGCTGGACAACCTCAATTGAAAGCCTTTCTTCCAAGATTGGGCATGACGAGGAAAAATCCAAAGCTGATCACAATGCTCTTCTTGATGATGGGTGGGATATTTTTGAGAAAGATGCAGAACTGAATTCCGGAGTTTGCTGA

Predicted protein sequences of Glyma10g03030

Limit To All Plant Sequences

>Glyma10g03030.3   sequence type=predicted peptide   gene model=Glyma10g03030   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGFNSVYRNLQEIFPQVDPRLLRAVAIEHPKDADLAAGIVLAEVIPFMSKKLPAAIPPQHNDHGAPLDVEVESEEEGNRLRHCQRVDDVNVGPSSTLSNGCNSKDDTEKFLGMDDIKELDIFQNAEDNFIGETLNEIAQEMSNGFIQEEDNENFERQPVDFDCENLISSADDYDVTPSHRLEECETYLIELESSEAQEVCHVQGDTLNSKDSLQSELDAGSSTAGGNTSDVENDNGAKSAGSQYSQVSRIDLLEEIIDEAKTNKKTLFSSMESLINLMREVEVQEKAAEQANMEAATGGSNILARIEEYKTMLVQAKEANDMHAGEVYGEKAILATELKELQSRLLGLSDERDKSLAILDEMRHILEERLAAAEESRKAAEQQKLEKEESARKALVEQERLVEMVVHESQRLQQEAEENSKLQEFLIDRGRVVDMLQGEISVICQDIKLLKEKFDANLPLSKSFTSSQTSCKLASSGSSHKTLASDAGSDHSESSGIRKTSWTTSIESLSSKIGHDEEKSKADHNALLDDGWDIFEKDAELNSGVC*

>Glyma10g03030.4   sequence type=predicted peptide   gene model=Glyma10g03030   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGFNSVYRNLQEIFPQVDPRLLRAVAIEHPKDADLAAGIVLAEVIPFMSKKLPAAIPPQHNDHGAPLDVEVESEEEGNRLRHCQRVDDVNVGPSSTLSNGCNSKDDTEKFLGMDDIKELDIFQNAEDNFIGETLNEIAQEMSNGFIQEEDNENFERQPVDFDCENLISSADDYDVTPSHRLEECETYLIELESSEAQEVCHVQGDTLNSKDSLQSELDAGSSTAGGNTSDVENDNGAKSAGSQYSQVSRIDLLEEIIDEAKTNKKTLFSSMESLINLMREVEVQEKAAEQANMEAATGGSNILARIEEYKTMLVQAKEANDMHAGEVYGEKAILATELKELQSRLLGLSDERDKSLAILDEMRHILEERLAAAEESRKAAEQQKLEKEESARKALVEQERLVEMVVHESQRLQQEAEENSKLQEFLIDRGRVVDMLQGEISVICQDIKLLKEKFDANLPLSKSFTSSQTSCKLASSGSSHKTLASDAGSDHSESSGIRKTSWTTSIESLSSKIGHDEEKSKADHNALLDDGWDIFEKDAELNSGVC*

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