Glyma10g02940 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma10g02940

Feature Type:	gene_model
Chromosome:	Gm10
Start:	2128481
stop:	2132917
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma10g02940

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G06190	AT	Annotation by Michelle Graham. TAIR10: BTB-POZ and MATH domain 2 \| chr3:1874577-1876575 REVERSE LENGTH=406	SoyBase	E_val: 0	ISS
GO:0000956	GO-bp	Annotation by Michelle Graham. GO Biological Process: nuclear-transcribed mRNA catabolic process	SoyBase	N/A	ISS
GO:0006970	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to osmotic stress	SoyBase	N/A	ISS
GO:0042631	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular response to water deprivation	SoyBase	N/A	ISS
GO:0071472	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular response to salt stress	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
KOG1987	KOG	Speckle-type POZ protein SPOP and related proteins with TRAF, MATH and BTB/POZ domains	JGI		ISS
PTHR24411	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24411:SF177	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24413	Panther		JGI		ISS
PF00651	PFAM	BTB/POZ domain	JGI		ISS
PF00917	PFAM	MATH domain	JGI		ISS
UniRef100_G7I2K6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Speckle-type POZ protein n=1 Tax=Medicago truncatula RepID=G7I2K6_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1L815	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1L815_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma10g02940

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma10g02940

Paralog	Evidence	Comments
Glyma02g16840	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma10g02940 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.10g024300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma10g02940

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma10g02940

Limit To All Plant Sequences

>Glyma10g02940.2   sequence type=transcript   gene model=Glyma10g02940   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TAAACACATAAATAAAAGCCATCATCGTCTCGTCGTCACCATTCATTTCATTTCTCTCTCTCTCAGAATCCAAACCCTAGGAAATTTCCCCTTCAGACGAAACCCTAGATTTCCTCTCACAAATCTCTCTCAGCTTCCCCATTCTCGGGATTCGGCGTCCAGATCACAGATCCCGTTCAATTTTTTTTCCGCATCCCCCGATCGGGTTTGGATTCTGAAGAAAGTTCAATTCCGCACAAATTCGAGACAATTGCTGCTGTCGAGGCTCGCGTTGCGCATGGGTAAGATTCTGAGAGAAACCGCGAGGCCGTTCTCGAATTGTTCGTCGTCGTCGGCGTCTCCGTTGTCGGCGCCGCCGGCAACGACGTCGTCGACGTCGTTGACGGACACGGTGAGGGGGTCGCACCGGTTCAAGATCACGGGGTATTCGCTGTCGAAGGGGATTGGGATTGGGAAGTACATAGCTTCTGATATATTCTCGGTGGGAGGGTACGATTGGGCGATCTATTTTTACCCCGACGGGAAGAGCGTGGAGGACAATGCTACGTACGTTTCGCTCTTCATCGCGCTTGCTAGCGAAGGGACCGACGTTAGGGCGCTTTTTGAGTTGACGCTTTTGGATCAGAGTGGGAAGGAGAGACACAAGGTGCATAGCCATTTTGAGAGGACCCTCGAGAGTGGACCCTACACGTTAAAATACCGTGGTAGCATGTGATTACTTGTGGGTGGGGGTTGCTTTAGAATCCTTCCCTTAAACGACATGAAGTGAATCATGCCTATCAAATCAGAGCATGAGGTGATAAGAGCTAATCTTGACCACACAACCATACATGGATGGGGTTACAAGCGGTTTTTTAAGAGAACAGCACTAGAGACATCAGATTACCTTAAAGATGATTGCCTTAGTGTTAATTGTAGTGTTGGTGTTGTGAAGTCACACACAGAGGGCCCTAAAATATATAAAATCCCAATTCCGTCTTCTAACATGGGTCAGCAATTTGGGAAGCTACTAGAAAGTGGGAAAGACAGTGATGTCAGTTTTGAAGTGAATGGAGAAATTTTCGCTGCTCATAAATTGGTTCTAGCAGCTCGCTCACCTGTTTTCAGGGCTCAACTTTTCGGTCCGATGAAAAATCAGAATACCCATTGTATAAAAGTTGAAGACATGGAGGCTCCAGTCTTTAAGGCATTGCTTCATGTTATATATTGGGACTCACTACCTGACATGCAAGAGCTTACTGGGTTGAGCTCAAAATGGGCTACTACCTTGATGGCTCAGCATCTGCTAGCAGCAGCTGATCGGTATGGCTTAGAGAGACTTAGGCTCATGTGTGAAACAAGTCTCTGTGAAGATGTTGCAATAAACACCGTTGCTACGACTCTAGCCTTGGCAGAACAGCACCATTGTTTCCAACTGAAAGCAGTCTGTCTGAAATTTGTTGCAAGGCCTGAAAATCTCAGAGCTGTGATGCAAACTGATGGTTTTGAGTACTTGAAGGAAAGTTGCCCATCTGTTTTGACTGAGCTTTTGGAGTATGTGGCTAGATTTACTGAGCATTCGGACTTCTTGTGCAAGCATAGGAATGAATTGATACTTGATGGCAGCGACGTAAATGGAAGGCGGGTGAAGCAAAGGCTATAGTGCTAAAGTGCAAACACTGACAAGTTCTCTGTACAACCCTCTACTCCTTGTTGCATTTAAAAATTTCCGTGAGAGCCACAGATAGAGGGAGATGATAAGCATTTATAGGATTAGTGGCAATTTCTAATTTTTTTTAGCTTCATGTCTAGGAGATGTAAATGTAGTTTGTTTTTTATGCTGTTGCAGGTCTGTCTGGCGTAGGTTTCTGTGATAACTTTGCTCTTAAAACATTTGTCTTAAAAAAGAAAGTATTGACCACTGCTATGTCTTCTTTTTTTCTCACTACACTACATATTCCCCGTACGAGGTGATTACCCCCACAAAGCTGAGGTTTGGGTCGTGAAAGTGAAACACAGATGGCAATGTATCTGGTTGGATTGGTTTCTATATGAAATATTGTCTGGGAATACCCTTGTGATAAAATGGATGAAGGAACGCGTTCAATTGTAGTTTTTGATAAAATTAAGGGATGTCATTGATAAACGACTGATAAGCTCAACATTCT

>Glyma10g02940.3   sequence type=transcript   gene model=Glyma10g02940   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GATAAGTACATGGAGATTTTGTGGTAAGAAAGCTGAACAGTTTGGTCAAAAGTCTAATTGTTAAAATTGGGTGTTTCAGGGGTTACAAGCGGTTTTTTAAGAGAACAGCACTAGAGACATCAGATTACCTTAAAGATGATTGCCTTAGTGTTAATTGTAGTGTTGGTGTTGTGAAGTCACACACAGAGGGCCCTAAAATATATAAAATCCCAATTCCGTCTTCTAACATGGGTCAGCAATTTGGGAAGCTACTAGAAAGTGGGAAAGACAGTGATGTCAGTTTTGAAGTGAATGGAGAAATTTTCGCTGCTCATAAATTGGTTCTAGCAGCTCGCTCACCTGTTTTCAGGGCTCAACTTTTCGGTCCGATGAAAAATCAGAATACCCATTGTATAAAAGTTGAAGACATGGAGGCTCCAGTCTTTAAGGCATTGCTTCATGTTATATATTGGGACTCACTACCTGACATGCAAGAGCTTACTGGGTTGAGCTCAAAATGGGCTACTACCTTGATGGCTCAGCATCTGCTAGCAGCAGCTGATCGGTATGGCTTAGAGAGACTTAGGCTCATGTGTGAAACAAGTCTCTGTGAAGATGTTGCAATAAACACCGTTGCTACGACTCTAGCCTTGGCAGAACAGCACCATTGTTTCCAACTGAAAGCAGTCTGTCTGAAATTTGTTGCAAGGCCTGAAAATCTCAGAGCTGTGATGCAAACTGATGGTTTTGAGTACTTGAAGGAAAGTTGCCCATCTGTTTTGACTGAGCTTTTGGAGTATGTGGCTAGATTTACTGAGCATTCGGACTTCTTGTGCAAGCATAGGAATGAATTGATACTTGATGGCAGCGACGTAAATGGAAGGCGGGTGAAGCAAAGGCTATAGTGCTAAAGTGCAAACACTGACAAGTTCTCTGTACAACCCTCTACTCCTTGTTGCATTTAAAAATTTCCGTGAGAGCCACAGATAGAGGGAGATGATAAGCATTTATAGGATTAGTGGCAATTTCTAATTTTTTTTAGCTTCATGTCTAGGAGATGTAAATGTAGTTTGTTTTTTATGCTGTTGCAGGTCTGTCTGGCGTAGGTTTCTGTGATAACTTTGCTCTTAAAACATTTGTCTTAAAAAAGAAAGTATTGACCACTGCTATGTCTTCTTTTTTTCTCACTACACTACATATTCCCCGTACGAGGTGATTACCCCCACAAAGCTGAGGTTTGGGTCGTGAAAGTGAAACACAGATGGCAATGTATCTGGTTGGATTGGTTTCTATATGAAATATTGTCTGGGAATACCCTTGTGATAAAATGGATGAAGGAACGCGTTCAATTGTAGTTTTTGATAAAATTAAGGGATGTCATTGATAAACGACTGATAAGCTCAACATTCT

Coding sequences of Glyma10g02940

Limit To All Plant Sequences

>Glyma10g02940.1   sequence type=CDS   gene model=Glyma10g02940   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTAAGATTCTGAGAGAAACCGCGAGGCCGTTCTCGAATTGTTCGTCGTCGTCGGCGTCTCCGTTGTCGGCGCCGCCGGCAACGACGTCGTCGACGTCGTTGACGGACACGGTGAGGGGGTCGCACCGGTTCAAGATCACGGGGTATTCGCTGTCGAAGGGGATTGGGATTGGGAAGTACATAGCTTCTGATATATTCTCGGTGGGAGGGTACGATTGGGCGATCTATTTTTACCCCGACGGGAAGAGCGTGGAGGACAATGCTACGTACGTTTCGCTCTTCATCGCGCTTGCTAGCGAAGGGACCGACGTTAGGGCGCTTTTTGAGTTGACGCTTTTGGATCAGAGTGGGAAGGAGAGACACAAGGTGCATAGCCATTTTGAGAGGACCCTCGAGAGTGGACCCTACACGTTAAAATACCGTGGTAGCATGTGGGGTTACAAGCGGTTTTTTAAGAGAACAGCACTAGAGACATCAGATTACCTTAAAGATGATTGCCTTAGTGTTAATTGTAGTGTTGGTGTTGTGAAGTCACACACAGAGGGCCCTAAAATATATAAAATCCCAATTCCGTCTTCTAACATGGGTCAGCAATTTGGGAAGCTACTAGAAAGTGGGAAAGACAGTGATGTCAGTTTTGAAGTGAATGGAGAAATTTTCGCTGCTCATAAATTGGTTCTAGCAGCTCGCTCACCTGTTTTCAGGGCTCAACTTTTCGGTCCGATGAAAAATCAGAATACCCATTGTATAAAAGTTGAAGACATGGAGGCTCCAGTCTTTAAGGCATTGCTTCATGTTATATATTGGGACTCACTACCTGACATGCAAGAGCTTACTGGGTTGAGCTCAAAATGGGCTACTACCTTGATGGCTCAGCATCTGCTAGCAGCAGCTGATCGGTATGGCTTAGAGAGACTTAGGCTCATGTGTGAAACAAGTCTCTGTGAAGATGTTGCAATAAACACCGTTGCTACGACTCTAGCCTTGGCAGAACAGCACCATTGTTTCCAACTGAAAGCAGTCTGTCTGAAATTTGTTGCAAGGCCTGAAAATCTCAGAGCTGTGATGCAAACTGATGGTTTTGAGTACTTGAAGGAAAGTTGCCCATCTGTTTTGACTGAGCTTTTGGAGTATGTGGCTAGATTTACTGAGCATTCGGACTTCTTGTGCAAGCATAGGAATGAATTGATACTTGATGGCAGCGACGTAAATGGAAGGCGGGTGAAGCAAAGGCTATAG

>Glyma10g02940.2   sequence type=CDS   gene model=Glyma10g02940   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCCTATCAAATCAGAGCATGAGGTGATAAGAGCTAATCTTGACCACACAACCATACATGGATGGGGTTACAAGCGGTTTTTTAAGAGAACAGCACTAGAGACATCAGATTACCTTAAAGATGATTGCCTTAGTGTTAATTGTAGTGTTGGTGTTGTGAAGTCACACACAGAGGGCCCTAAAATATATAAAATCCCAATTCCGTCTTCTAACATGGGTCAGCAATTTGGGAAGCTACTAGAAAGTGGGAAAGACAGTGATGTCAGTTTTGAAGTGAATGGAGAAATTTTCGCTGCTCATAAATTGGTTCTAGCAGCTCGCTCACCTGTTTTCAGGGCTCAACTTTTCGGTCCGATGAAAAATCAGAATACCCATTGTATAAAAGTTGAAGACATGGAGGCTCCAGTCTTTAAGGCATTGCTTCATGTTATATATTGGGACTCACTACCTGACATGCAAGAGCTTACTGGGTTGAGCTCAAAATGGGCTACTACCTTGATGGCTCAGCATCTGCTAGCAGCAGCTGATCGGTATGGCTTAGAGAGACTTAGGCTCATGTGTGAAACAAGTCTCTGTGAAGATGTTGCAATAAACACCGTTGCTACGACTCTAGCCTTGGCAGAACAGCACCATTGTTTCCAACTGAAAGCAGTCTGTCTGAAATTTGTTGCAAGGCCTGAAAATCTCAGAGCTGTGATGCAAACTGATGGTTTTGAGTACTTGAAGGAAAGTTGCCCATCTGTTTTGACTGAGCTTTTGGAGTATGTGGCTAGATTTACTGAGCATTCGGACTTCTTGTGCAAGCATAGGAATGAATTGATACTTGATGGCAGCGACGTAAATGGAAGGCGGGTGAAGCAAAGGCTATAG

>Glyma10g02940.3   sequence type=CDS   gene model=Glyma10g02940   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTCAGCAATTTGGGAAGCTACTAGAAAGTGGGAAAGACAGTGATGTCAGTTTTGAAGTGAATGGAGAAATTTTCGCTGCTCATAAATTGGTTCTAGCAGCTCGCTCACCTGTTTTCAGGGCTCAACTTTTCGGTCCGATGAAAAATCAGAATACCCATTGTATAAAAGTTGAAGACATGGAGGCTCCAGTCTTTAAGGCATTGCTTCATGTTATATATTGGGACTCACTACCTGACATGCAAGAGCTTACTGGGTTGAGCTCAAAATGGGCTACTACCTTGATGGCTCAGCATCTGCTAGCAGCAGCTGATCGGTATGGCTTAGAGAGACTTAGGCTCATGTGTGAAACAAGTCTCTGTGAAGATGTTGCAATAAACACCGTTGCTACGACTCTAGCCTTGGCAGAACAGCACCATTGTTTCCAACTGAAAGCAGTCTGTCTGAAATTTGTTGCAAGGCCTGAAAATCTCAGAGCTGTGATGCAAACTGATGGTTTTGAGTACTTGAAGGAAAGTTGCCCATCTGTTTTGACTGAGCTTTTGGAGTATGTGGCTAGATTTACTGAGCATTCGGACTTCTTGTGCAAGCATAGGAATGAATTGATACTTGATGGCAGCGACGTAAATGGAAGGCGGGTGAAGCAAAGGCTATAG

Predicted protein sequences of Glyma10g02940

Limit To All Plant Sequences

>Glyma10g02940.1   sequence type=predicted peptide   gene model=Glyma10g02940   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGKILRETARPFSNCSSSSASPLSAPPATTSSTSLTDTVRGSHRFKITGYSLSKGIGIGKYIASDIFSVGGYDWAIYFYPDGKSVEDNATYVSLFIALASEGTDVRALFELTLLDQSGKERHKVHSHFERTLESGPYTLKYRGSMWGYKRFFKRTALETSDYLKDDCLSVNCSVGVVKSHTEGPKIYKIPIPSSNMGQQFGKLLESGKDSDVSFEVNGEIFAAHKLVLAARSPVFRAQLFGPMKNQNTHCIKVEDMEAPVFKALLHVIYWDSLPDMQELTGLSSKWATTLMAQHLLAAADRYGLERLRLMCETSLCEDVAINTVATTLALAEQHHCFQLKAVCLKFVARPENLRAVMQTDGFEYLKESCPSVLTELLEYVARFTEHSDFLCKHRNELILDGSDVNGRRVKQRL*

>Glyma10g02940.2   sequence type=predicted peptide   gene model=Glyma10g02940   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MPIKSEHEVIRANLDHTTIHGWGYKRFFKRTALETSDYLKDDCLSVNCSVGVVKSHTEGPKIYKIPIPSSNMGQQFGKLLESGKDSDVSFEVNGEIFAAHKLVLAARSPVFRAQLFGPMKNQNTHCIKVEDMEAPVFKALLHVIYWDSLPDMQELTGLSSKWATTLMAQHLLAAADRYGLERLRLMCETSLCEDVAINTVATTLALAEQHHCFQLKAVCLKFVARPENLRAVMQTDGFEYLKESCPSVLTELLEYVARFTEHSDFLCKHRNELILDGSDVNGRRVKQRL*

>Glyma10g02940.3   sequence type=predicted peptide   gene model=Glyma10g02940   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGQQFGKLLESGKDSDVSFEVNGEIFAAHKLVLAARSPVFRAQLFGPMKNQNTHCIKVEDMEAPVFKALLHVIYWDSLPDMQELTGLSSKWATTLMAQHLLAAADRYGLERLRLMCETSLCEDVAINTVATTLALAEQHHCFQLKAVCLKFVARPENLRAVMQTDGFEYLKESCPSVLTELLEYVARFTEHSDFLCKHRNELILDGSDVNGRRVKQRL*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain