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Report for Sequence Feature Glyma10g02930

Feature Type:gene_model
Chromosome:Gm10
Start:2116853
stop:2124676
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma10g02930
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G02920AT Annotation by Michelle Graham. TAIR10: unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G03340.1); Has 41 Blast hits to 41 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr4:1292816-1294670 FORWARD LENGTH=418 SoyBaseE_val: 4.00E-84ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0005739GO-cc Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
UniRef100_E4MWC7UniRef Annotation by Michelle Graham. Most informative UniRef hit: mRNA, clone: RTFL01-07-P23 n=1 Tax=Eutrema halophilum RepID=E4MWC7_THEHA SoyBaseE_val: 2.00E-81ISS
UniRef100_I1L814UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1L814_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma10g02930
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma10g02930
ParalogEvidenceComments
Glyma02g16850 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma10g02930 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.10g024200 Wm82.a2.v1IGC As supplied by JGI

References for Glyma10g02930
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma10g02930
>Glyma10g02930.1   sequence type=CDS   gene model=Glyma10g02930   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATGCAGAAACTGTGTTTGATTGCTTCCCATGGATGCCCTCCGGGGCTAACTTTGCAGCAAGAGCTGGCCATGGTTGGCTGCACCATTACCAAGGGTTGTCAACCATTATTGCCTTCATCTGTACTGAAACCTGAAATTATCAGATACGGATCCCCACTAAATCCATTTGAGGAGTCAAGCAAGTCCCGGAAAGAGTGGTTCAATTCTAATCAGATTGTCAACGTGAACTTGTCGACTCAAAGGCCTATGCTTATTGATGTTCAAGAAACATATCCAAGCCCAGTAGATTTTGGCTTTGGCATCATTGAACGATGCAGTGAGCATGATAAAATTTTGCAGTGTATCATGTCTGAGAGTGCTGAAGCTGGGATAGGTGGAGTACATATATCTTTGTTGTCTGACTTGATGGATTTGCAATTGTCAAGCATTGATGAACCTCAAAAACCATTGACACCTCTTATCCCAAAAAGCAAATTCTTCATCCCGAAGCTTTTGCTTGATATTTTTCAAGATTCGCCCATTAGTTCAAAGATTACAGTTCATCCAGATGGTCAAGTCACTTTTATGGACACTGCAATTGAGATAAAAGATCTTCTTTCTGTAGTTGCTGACTCATACTTATTACGTAAGGGTGAAAAACAATCTATGCTTGTTCCACACTTCAGCAGGATGAGTATCAACGAAGTAGAAGTCAGAAGTCTTTCCTCCACATTGGATATTCATTCTACATTGACTGTTCCTTTAAAGAGTCCTGAGAAAGTGAAAGTCAAGCCATCACAAAAGAAGAACAAGAAAGTAGCCAGAGAGAGGGATCTCTTCAAGAAGAACTACTTACATGCATGTGAGAGCCTTCTGTCCCTAATGGTTGACAAGAGGCGACACCGGAAAACAGCAATTCTCTCCCTGAAGAAATCTGGTCCCGAGCTTCCTGAGCTCCTCACACAATTTTCTGCCAGCATTGCCGGTACTGGCCTTGCTGTCCTGCTATCTGTGATCTGTAAGCTAGCTTGTGGAAGGGGGGTTCCCTTTTGTGCTTATAAGCTCCTCAACACTGGGTTTGGATTTGGGCTGGTTTGGCTTTCTTGGGCAGTTAATAAGCTAAGGGATACAATTGTCTGCATGAACAAGAATGCAGGAAAGCTTGGACTGAAAGATGAGGAAATGATTCAAAAGGTCGACAAGAGCCTAAGAGAAGTTTACTTCAGAGCCGCCGCATTGCTAGCAGTGGCAGTGCTAAGGCTTGCTTGA
Predicted protein sequences of Glyma10g02930
>Glyma10g02930.1   sequence type=predicted peptide   gene model=Glyma10g02930   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MMQKLCLIASHGCPPGLTLQQELAMVGCTITKGCQPLLPSSVLKPEIIRYGSPLNPFEESSKSRKEWFNSNQIVNVNLSTQRPMLIDVQETYPSPVDFGFGIIERCSEHDKILQCIMSESAEAGIGGVHISLLSDLMDLQLSSIDEPQKPLTPLIPKSKFFIPKLLLDIFQDSPISSKITVHPDGQVTFMDTAIEIKDLLSVVADSYLLRKGEKQSMLVPHFSRMSINEVEVRSLSSTLDIHSTLTVPLKSPEKVKVKPSQKKNKKVARERDLFKKNYLHACESLLSLMVDKRRHRKTAILSLKKSGPELPELLTQFSASIAGTGLAVLLSVICKLACGRGVPFCAYKLLNTGFGFGLVWLSWAVNKLRDTIVCMNKNAGKLGLKDEEMIQKVDKSLREVYFRAAALLAVAVLRLA*






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