Glyma10g02920 - SoyBase

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Report for Sequence Feature Glyma10g02920

Feature Type:	gene_model
Chromosome:	Gm10
Start:	2109249
stop:	2115542
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma10g02920

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G63900	AT	Annotation by Michelle Graham. TAIR10: E3 Ubiquitin ligase family protein \| chr1:23717056-23719086 FORWARD LENGTH=343	SoyBase	E_val: 0	ISS
GO:0009658	GO-bp	Annotation by Michelle Graham. GO Biological Process: chloroplast organization	SoyBase	N/A	ISS
GO:0045037	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein import into chloroplast stroma	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0009941	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope	SoyBase	N/A	ISS
GO:0004842	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ubiquitin-protein ligase activity	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
KOG1571	KOG	Predicted E3 ubiquitin ligase	JGI		ISS
PTHR12183	Panther	UNCHARACTERIZED RING ZINC FINGER-CONTAINING PROTEIN	JGI		ISS
PF12483	PFAM	E3 Ubiquitin ligase	JGI		ISS
UniRef100_I1L813	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1L813_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q1RSJ8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Zinc finger, RING-type n=1 Tax=Medicago truncatula RepID=Q1RSJ8_MEDTR	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma10g02920

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma10g02920

Paralog	Evidence	Comments
Glyma02g16860	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma10g02920 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.10g024100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma10g02920

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma10g02920

Limit To All Plant Sequences

>Glyma10g02920.1   sequence type=CDS   gene model=Glyma10g02920   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATTCCTTGGGGTGGCCTCAGTTGCTGTTTGAGTGCTGCTGCTCTTTACCTTCTCGGCAGAAGCAGTGGCAGGGATGCGGAAATTCTTAAATCCGTTACAAGGGTCAATCAGCTGAAGGAACTAGCTCAACTGTTAGATGCAGAAATATTACCCTTGATTGTTACAATTTCTGGAAGAGTTAGCTCTGAAACCCCAATTAACTGCGAGTTCAGTGGTTTAAGAGGTGTAATAGTTGAAGAAACAGCAGAGCAACATTTTCTTAAACACAATGATGCTGGTTCCTGGATACAAGATTCCGCTTTGATGCTATCAATGAGTAAAGAGGTTCCTTGGTATCTGGATGATGGGACTGATCGTGTGCATGTGGTTGGAGCTCGAGGTGCTTCTGGTTTTGCATTACCTGTTGGAATTGAGGCATTTGAAGAGTCGGGTCGGTCACTTGTACGTGGAACTTTGGATTATCTGCAAGGTCTCAAGATGCTTGGAGTCAAGAGAATTGAACGGGTACTTCCAGTTGGAACTTCCTTGACTGTTGTTGGTGAGGCTGCTAAAGATGATGTTGGCGCTATTCGAATTCAGCGACCCCACAAAGGGCCATTTTATGTCTCTCCCAAAACAATTGATCAACTAATTGCAAATCTGGGGAAATGGGCAAGGTGGTATAAGTATGCTTCTGTGGGCTTGACGGTGTTTGGTGCTTATCTGATAGCCAAGCATGCTATTCGGTACATATTGGAAAGACGGCGCCGCAGCGAACTTCAAAGAAGGGTTCTTGCTGCAGCTGCTAAGAAGTCGGGACAAAATAATGATGTTGAAAAGGCCGACAGCTTATCAGATGGTGCTAAAAAGGATCGCTTAATGCCAGATTTGTGTGTAATATGCCTTGAGCAGGAATATAATGCTGTTTTTGTTCCGTGTGGGCATATGTGCTGCTGTACAGCTTGTTCTTCACACTTGACCAATTGTCCTCTCTGCCGGCGACAGATAGAGAAGGTTGTGAAGACTTTCCGTCATTGA

Predicted protein sequences of Glyma10g02920

Limit To All Plant Sequences

>Glyma10g02920.1   sequence type=predicted peptide   gene model=Glyma10g02920   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MIPWGGLSCCLSAAALYLLGRSSGRDAEILKSVTRVNQLKELAQLLDAEILPLIVTISGRVSSETPINCEFSGLRGVIVEETAEQHFLKHNDAGSWIQDSALMLSMSKEVPWYLDDGTDRVHVVGARGASGFALPVGIEAFEESGRSLVRGTLDYLQGLKMLGVKRIERVLPVGTSLTVVGEAAKDDVGAIRIQRPHKGPFYVSPKTIDQLIANLGKWARWYKYASVGLTVFGAYLIAKHAIRYILERRRRSELQRRVLAAAAKKSGQNNDVEKADSLSDGAKKDRLMPDLCVICLEQEYNAVFVPCGHMCCCTACSSHLTNCPLCRRQIEKVVKTFRH*

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