Glyma10g02900 - SoyBase

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Report for Sequence Feature Glyma10g02900

Feature Type:	gene_model
Chromosome:	Gm10
Start:	2081691
stop:	2087296
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma10g02900

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G02940	AT	Annotation by Michelle Graham. TAIR10: oxidoreductase, 2OG-Fe(II) oxygenase family protein \| chr4:1306658-1310699 FORWARD LENGTH=569	SoyBase	E_val: 0	ISS
GO:0055114	GO-bp	Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process	SoyBase	N/A	ISS
GO:0080167	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to karrikin	SoyBase	N/A	ISS
GO:0016491	GO-mf	Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity	SoyBase	N/A	ISS
GO:0016706	GO-mf	Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	SoyBase	N/A	ISS
KOG4176	KOG	Uncharacterized conserved protein	JGI		ISS
PF03171	PFAM	2OG-Fe(II) oxygenase superfamily	JGI		ISS
UniRef100_D7M3B5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Oxidoreductase n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7M3B5_ARALL	SoyBase	E_val: 0	ISS
UniRef100_I1L811	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1L811_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma10g02900

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma10g02900

Paralog	Evidence	Comments
Glyma02g16870	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma10g02900 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.10g023900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma10g02900

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma10g02900

Limit To All Plant Sequences

>Glyma10g02900.2   sequence type=transcript   gene model=Glyma10g02900   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CTACACATACATGCATTGCATATACATAAGAGGATCGAGTATTTAAGCTCACACACTAACACAATAATTCATAAACCCCTTTCTCACAGGCATAGCTATATACCTTGTTCTTCTTCAACCTTTTTCTTTTTTCCTTCGATTTGGGCCCAACACAAACGCACCATTGGCTCCGATCACTGCGTATCATCACAATTCCATGGCGGCTGGCCCTACATCACTCTCCGATCGATCCACGATGGTCCCTCCCCCAATGCTCGTCTCCGACTCCTTCGCCAAGGACGCAATCCTCGCCTGGTTCCGCGGCGAGTTCGCCGCCGCCAACGCCATCATCGACGCCCTCTGCGCCCACCTCTCCTCCGCCGCTGCATCCTCCGCCCACGACTACGACGCCGTCTTCGCCGCCATCCACCGCCGCAGGCTCAACTGGATCCCCGTCCTCCAGATGCAGAAGTACCACTCCATCGCCGACGTCACGCTCGAGCTCGCCAGACTCGCCGATAGAAACCACTACGCTGCCGCCGAAGACGACGACGCCAAACACGAAACCGACGAGAAAACGACGCCGTCGGAGAGTGTCGGAGATGGTGGTGGCGGTGATGAACACGAGGAGTATGAGTCACCCGAGAGCGAGATTACTGATTCAGGATCTCAAGAAATGCAGGCTAGTCCAACGAACGTTAATATATGTTCCAATCATGAACAGTGTGAAGGACGTTCTTCACAGTTTAAGTTGACAAAAGGTTTCACAGCAAAAGAGTCAGTGAAGGGACATATGGAGAATGTAGTAAAAGGATTGAAGTTATATGAGGACATTTTCACTGATTCAGAACTGTGCAAGCTGACAGATTTTGTCAATGAGATCCATGCTGCTGGCCAAAATGGGGAACTGTCAGGTGAAACTTTTATATTATTCAACAAGCAGATGAAAGGGAACAAGAGAGAGCTGATTCAACTGGGTGTTCCAATATTTGGACAGATAAAGGAGGATGCAAAATGCAATATAGAACCAATTCCAGCACTTCTCCAAGGTGTCATTGATCATCTTATTCAGTGGCAATTACTTCCCGAGTACAAAAGACCAAATGGTTGTATCATCAACTTCTTTGAAGAGGGGGAGTTTTCTCAGCCATTTCTGAAACCACCACATTTGGATCAACCTGTGTCGACTCTTCTTCTCTCTGAATCAACTATGGCTTTTGGGCGTATACTTATGAGTGAAAATGATGGGAACTACAAGGGGCCACTCACGCTCTCATTGAAGCAGGGGTACATATTAAAGAACTTATACTCTTTGCAGTCCTAATCTTCCATTTATTAATTAAGATTCTAGTCACAATGCTGGATACAAAGGAAGAAGTACCTTCAACATTTATAGGACAGAATGTCTCTTTTAGTGATGAGAGGAAACAGTGCCGACATGGCGAGGCACGTAATGTGTCCATCCCCTAACAGAAGGGTCAGCATCACCTTCTTCAGAGTGAGGCCAGACTCCAACCAATGCCAATCTCCAACTCCTACTACGATGACAAGTGCGATGACTGTGTGGCAACCTGGCATTGCCGCTAGTCCATATGCTTTGCCAAATGGTGCTCTAACTAGCTATGAGGGTATGGACATGAACATGATGCCCAAATGGGGAATGCTTCGCGCCCCAATGGTGATGCTTACTCCTATGCGTCCTGTGGCGCTGAACCCTCACAAACTTTCTGGTGGTGGGACTGGAGTGTTCTTGCCCTGGAATGTGCCATCTAGAAAACCTGCTAAGCATCTTCCCCCACGTGCACAAAAAGGAAGGCTTCTCACATTACCTTCCCCTGTTGAACCTCAAATGGGAGAGTCCACTTCTTAACCAAGCATTTGTATTGAAGGATGATAAGCACATGTTTAGTTCTGAAAGCAGCCTTGGGTTTGAAGAAATGTGAATCAAGAAAGGTGGCTTCCACTACTCAGCTATTTGCTCTACACTGTTGAGCATTTTATTTAGTTGTACAAACACGGCCCCACCCCAGGTGCTGCAAGAGCAGTTTGGTTCATTCTTTTTCTTTCTTTTTCTTTTTCCCTTTGGATAGAGCAGAGTCTAGTGGTGTTCACAACGGTTTTCTATGTTTGCCAATCACGGCAAGAGCTTTAGTAGAGTAGTCAAGCTTTCAAATTTGAAGAGTGTGAATTATATCTGACGGTAGCATTTTGTAAGAATGATATTTGAAGTTAATCATCTACTTAACACGCAGCTGTTATTTGTGGATTGTTTTAATTATTCTTTTATCGGTTAAATAAGTA

Coding sequences of Glyma10g02900

Limit To All Plant Sequences

>Glyma10g02900.1   sequence type=CDS   gene model=Glyma10g02900   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGGCTGGCCCTACATCACTCTCCGATCGATCCACGATGGTCCCTCCCCCAATGCTCGTCTCCGACTCCTTCGCCAAGGACGCAATCCTCGCCTGGTTCCGCGGCGAGTTCGCCGCCGCCAACGCCATCATCGACGCCCTCTGCGCCCACCTCTCCTCCGCCGCTGCATCCTCCGCCCACGACTACGACGCCGTCTTCGCCGCCATCCACCGCCGCAGGCTCAACTGGATCCCCGTCCTCCAGATGCAGAAGTACCACTCCATCGCCGACGTCACGCTCGAGCTCGCCAGACTCGCCGATAGAAACCACTACGCTGCCGCCGAAGACGACGACGCCAAACACGAAACCGACGAGAAAACGACGCCGTCGGAGAGTGTCGGAGATGGTGGTGGCGGTGATGAACACGAGGAGTATGAGTCACCCGAGAGCGAGATTACTGATTCAGGATCTCAAGAAATGCAGGCTAGTCCAACGAACGTTAATATATGTTCCAATCATGAACAGTGTGAAGGACGTTCTTCACAGTTTAAGTTGACAAAAGGTTTCACAGCAAAAGAGTCAGTGAAGGGACATATGGAGAATGTAGTAAAAGGATTGAAGTTATATGAGGACATTTTCACTGATTCAGAACTGTGCAAGCTGACAGATTTTGTCAATGAGATCCATGCTGCTGGCCAAAATGGGGAACTGTCAGGTGAAACTTTTATATTATTCAACAAGCAGATGAAAGGGAACAAGAGAGAGCTGATTCAACTGGGTGTTCCAATATTTGGACAGATAAAGGAGGATGCAAAATGCAATATAGAACCAATTCCAGCACTTCTCCAAGGTGTCATTGATCATCTTATTCAGTGGCAATTACTTCCCGAGTACAAAAGACCAAATGGTTGTATCATCAACTTCTTTGAAGAGGGGGAGTTTTCTCAGCCATTTCTGAAACCACCACATTTGGATCAACCTGTGTCGACTCTTCTTCTCTCTGAATCAACTATGGCTTTTGGGCGTATACTTATGAGTGAAAATGATGGGAACTACAAGGGGCCACTCACGCTCTCATTGAAGCAGGGGTCTCTTTTAGTGATGAGAGGAAACAGTGCCGACATGGCGAGGCACGTAATGTGTCCATCCCCTAACAGAAGGGTCAGCATCACCTTCTTCAGAGTGAGGCCAGACTCCAACCAATGCCAATCTCCAACTCCTACTACGATGACAAGTGCGATGACTGTGTGGCAACCTGGCATTGCCGCTAGTCCATATGCTTTGCCAAATGGTGCTCTAACTAGCTATGAGGGTATGGACATGAACATGATGCCCAAATGGGGAATGCTTCGCGCCCCAATGGTGATGCTTACTCCTATGCGTCCTGTGGCGCTGAACCCTCACAAACTTTCTGGTGGTGGGACTGGAGTGTTCTTGCCCTGGAATGTGCCATCTAGAAAACCTGCTAAGCATCTTCCCCCACGTGCACAAAAAGGAAGGCTTCTCACATTACCTTCCCCTGTTGAACCTCAAATGGGAGAGTCCACTTCTTAA

>Glyma10g02900.2   sequence type=CDS   gene model=Glyma10g02900   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGGCTGGCCCTACATCACTCTCCGATCGATCCACGATGGTCCCTCCCCCAATGCTCGTCTCCGACTCCTTCGCCAAGGACGCAATCCTCGCCTGGTTCCGCGGCGAGTTCGCCGCCGCCAACGCCATCATCGACGCCCTCTGCGCCCACCTCTCCTCCGCCGCTGCATCCTCCGCCCACGACTACGACGCCGTCTTCGCCGCCATCCACCGCCGCAGGCTCAACTGGATCCCCGTCCTCCAGATGCAGAAGTACCACTCCATCGCCGACGTCACGCTCGAGCTCGCCAGACTCGCCGATAGAAACCACTACGCTGCCGCCGAAGACGACGACGCCAAACACGAAACCGACGAGAAAACGACGCCGTCGGAGAGTGTCGGAGATGGTGGTGGCGGTGATGAACACGAGGAGTATGAGTCACCCGAGAGCGAGATTACTGATTCAGGATCTCAAGAAATGCAGGCTAGTCCAACGAACGTTAATATATGTTCCAATCATGAACAGTGTGAAGGACGTTCTTCACAGTTTAAGTTGACAAAAGGTTTCACAGCAAAAGAGTCAGTGAAGGGACATATGGAGAATGTAGTAAAAGGATTGAAGTTATATGAGGACATTTTCACTGATTCAGAACTGTGCAAGCTGACAGATTTTGTCAATGAGATCCATGCTGCTGGCCAAAATGGGGAACTGTCAGGTGAAACTTTTATATTATTCAACAAGCAGATGAAAGGGAACAAGAGAGAGCTGATTCAACTGGGTGTTCCAATATTTGGACAGATAAAGGAGGATGCAAAATGCAATATAGAACCAATTCCAGCACTTCTCCAAGGTGTCATTGATCATCTTATTCAGTGGCAATTACTTCCCGAGTACAAAAGACCAAATGGTTGTATCATCAACTTCTTTGAAGAGGGGGAGTTTTCTCAGCCATTTCTGAAACCACCACATTTGGATCAACCTGTGTCGACTCTTCTTCTCTCTGAATCAACTATGGCTTTTGGGCGTATACTTATGAGTGAAAATGATGGGAACTACAAGGGGCCACTCACGCTCTCATTGAAGCAGGGGTACATATTAAAGAACTTATACTCTTTGCAGTCCTAA

Predicted protein sequences of Glyma10g02900

Limit To All Plant Sequences

>Glyma10g02900.1   sequence type=predicted peptide   gene model=Glyma10g02900   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAAGPTSLSDRSTMVPPPMLVSDSFAKDAILAWFRGEFAAANAIIDALCAHLSSAAASSAHDYDAVFAAIHRRRLNWIPVLQMQKYHSIADVTLELARLADRNHYAAAEDDDAKHETDEKTTPSESVGDGGGGDEHEEYESPESEITDSGSQEMQASPTNVNICSNHEQCEGRSSQFKLTKGFTAKESVKGHMENVVKGLKLYEDIFTDSELCKLTDFVNEIHAAGQNGELSGETFILFNKQMKGNKRELIQLGVPIFGQIKEDAKCNIEPIPALLQGVIDHLIQWQLLPEYKRPNGCIINFFEEGEFSQPFLKPPHLDQPVSTLLLSESTMAFGRILMSENDGNYKGPLTLSLKQGSLLVMRGNSADMARHVMCPSPNRRVSITFFRVRPDSNQCQSPTPTTMTSAMTVWQPGIAASPYALPNGALTSYEGMDMNMMPKWGMLRAPMVMLTPMRPVALNPHKLSGGGTGVFLPWNVPSRKPAKHLPPRAQKGRLLTLPSPVEPQMGESTS*

>Glyma10g02900.2   sequence type=predicted peptide   gene model=Glyma10g02900   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAAGPTSLSDRSTMVPPPMLVSDSFAKDAILAWFRGEFAAANAIIDALCAHLSSAAASSAHDYDAVFAAIHRRRLNWIPVLQMQKYHSIADVTLELARLADRNHYAAAEDDDAKHETDEKTTPSESVGDGGGGDEHEEYESPESEITDSGSQEMQASPTNVNICSNHEQCEGRSSQFKLTKGFTAKESVKGHMENVVKGLKLYEDIFTDSELCKLTDFVNEIHAAGQNGELSGETFILFNKQMKGNKRELIQLGVPIFGQIKEDAKCNIEPIPALLQGVIDHLIQWQLLPEYKRPNGCIINFFEEGEFSQPFLKPPHLDQPVSTLLLSESTMAFGRILMSENDGNYKGPLTLSLKQGYILKNLYSLQS*

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