Glyma10g02850 - SoyBase

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Report for Sequence Feature Glyma10g02850

Feature Type:	gene_model
Chromosome:	Gm10
Start:	2034717
stop:	2039376
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma10g02850

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G48030	AT	Annotation by Michelle Graham. TAIR10: DNAse I-like superfamily protein \| chr2:19647834-19649988 REVERSE LENGTH=438	SoyBase	E_val: 2.00E-172	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0016787	GO-mf	Annotation by Michelle Graham. GO Molecular Function: hydrolase activity	SoyBase	N/A	ISS
PF03372	PFAM	Endonuclease/Exonuclease/phosphatase family	JGI		ISS
UniRef100_B9SFL5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Hydrolase, putative n=1 Tax=Ricinus communis RepID=B9SFL5_RICCO	SoyBase	E_val: 0	ISS
UniRef100_I1L806	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1L806_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma10g02850

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma10g02850

Paralog	Evidence	Comments
Glyma02g16950	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma10g02850 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.10g023500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma10g02850

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma10g02850

Limit To All Plant Sequences

>Glyma10g02850.1   sequence type=CDS   gene model=Glyma10g02850   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATCTCCCCAAGGCAAGACCCTCTGTTGCCCCACACCCACTTCTCTACCATGTTCAAGCTCCTCAACAAGAACCTCCGCCGCCTCCTCCGCCGTCTCCGGTGGCCAATTCGCCGCCGCTCAAAGCCCAAAGTAGTAGTGATCAACAAGCTCGGAAAGAACGCCCCAAAAGCCCAAACCGAAGCAAGCACAAATTTTTCCGCCGCGGTTCATCCGAACGCGCAATTGGGTACTCCGAAACCCATTCGGGTCGCGACCTTCAACGCCGCCCTGTTCTCCATGGCACCGGCGCTCCCAAAACCCACGTTCGAGGACCAAAACGGCATCGCTTCGAAGAACCCCGAAAACCTGAATTCGCGATCCAGGTCGACGAAGGAGCGTCCCAGAAGCATACTGAAACAATCGCAGTCAGTGAAGAACAGAGTAAATGACAGCGACAACGTGACGAGGTTGGCGAAATCGAAGATGAGGGTTTCCATAAATTTACCAGACAACGAGATATCGCTGCTGCGAAGCCGACAATCGAGCTTCTCGGAACACGACAAGGCCTCCTCGTGGTGGGGAGGGGGTGGGGTCCACGTGAGCAACAGAACAGTTGTTGAGGTTCTGAAGGAAGTGGACGCTGATGTTTTGGGGCTGCAAGATGTGAAGGCGGAGGAAGAGAACGGGATGAAGCCATTGTCGGATTTGGCGGCGGCGCTGGGAATGAATTATGTGTTCGCGGAAAGCTGGGCACCCGAGTACGGCAACGCTGTCTTGTCCAAATGGCCCATCAAACGCTGGAACTCTCACAAAATCTTCGATCACACTGATTTCAGGAATGTTCTGAAGGCCACTATCGACGTACCACTAGCAGGTGAACTTAACTTCTACTGCACCAACCTTGATCTTCTTGATGAGAATTGGCGAATGAAGCAGGTAAATGCAATAATCCAATCTAGTGATGAGCCTCACATCTTAGCTGGAGGACTTAATTCACTTGATGAATCGGATTACTCCCAAGAAAGATGGACAGATATTGTGAAGTACTATGAAGAGATGGGAAAGCCAACACCAAAGGTTGAAGTGATGAAATATCTCAAGAGTAAAGACTACACTGATGCTAAGGACTATGCAGGGGAATGCGAGTCAGTTGTCATGATTGCCAAGGGCCAAAGTGTCCAGGGAACATGTAAGTATGGAACTCGGGTAGATTACATATTATCATCATCAAATTCTCCATACAAGTTTGTTCCCGGTTCCTATTTAGTCCTTTCTTCCAAAGGGACATCAGATCATCACATAGTGAAAGTTGATGTGGTGATGGCAAATAACAATCCTGAAGAAAATAATGTGACAAAGAATCCGCAACAACGAAGACAGAGATTTGTAAGAATAACACATTCCAATCCGTCAAAAGGTGTCTGGAAACCATACAATTGA

Predicted protein sequences of Glyma10g02850

Limit To All Plant Sequences

>Glyma10g02850.1   sequence type=predicted peptide   gene model=Glyma10g02850   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MISPRQDPLLPHTHFSTMFKLLNKNLRRLLRRLRWPIRRRSKPKVVVINKLGKNAPKAQTEASTNFSAAVHPNAQLGTPKPIRVATFNAALFSMAPALPKPTFEDQNGIASKNPENLNSRSRSTKERPRSILKQSQSVKNRVNDSDNVTRLAKSKMRVSINLPDNEISLLRSRQSSFSEHDKASSWWGGGGVHVSNRTVVEVLKEVDADVLGLQDVKAEEENGMKPLSDLAAALGMNYVFAESWAPEYGNAVLSKWPIKRWNSHKIFDHTDFRNVLKATIDVPLAGELNFYCTNLDLLDENWRMKQVNAIIQSSDEPHILAGGLNSLDESDYSQERWTDIVKYYEEMGKPTPKVEVMKYLKSKDYTDAKDYAGECESVVMIAKGQSVQGTCKYGTRVDYILSSSNSPYKFVPGSYLVLSSKGTSDHHIVKVDVVMANNNPEENNVTKNPQQRRQRFVRITHSNPSKGVWKPYN*

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