Glyma10g02810 - SoyBase

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Report for Sequence Feature Glyma10g02810

Feature Type:	gene_model
Chromosome:	Gm10
Start:	2003928
stop:	2005133
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma10g02810

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G03440	AT	Annotation by Michelle Graham. TAIR10: Leucine-rich repeat (LRR) family protein \| chr1:852681-853874 FORWARD LENGTH=397	SoyBase	E_val: 0	ISS
GO:0007165	GO-bp	Annotation by Michelle Graham. GO Biological Process: signal transduction	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
KOG0617	KOG	Ras suppressor protein (contains leucine-rich repeats)	JGI		ISS
PTHR26393	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR26393:SF474	Panther		JGI		ISS
PF00560	PFAM	Leucine Rich Repeat	JGI		ISS
PF08263	PFAM	Leucine rich repeat N-terminal domain	JGI		ISS
UniRef100_G7I2T3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Receptor-like protein kinase n=1 Tax=Medicago truncatula RepID=G7I2T3_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI0002336E65	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0002336E65 related cluster n=1 Tax=unknown RepID=UPI0002336E65	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma10g02810

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma10g02810

Paralog	Evidence	Comments
Glyma02g16990	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma10g02810 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.10g023100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma10g02810

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma10g02810

Limit To All Plant Sequences

>Glyma10g02810.2   sequence type=CDS   gene model=Glyma10g02810   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCAAGTGCAGGAGTTCTACTTCTCCCTATGCATTGTTTGTGTTCTTCTTCTGCTTTCTACAAGTCCAGGCGATTCTGGACCCTGCCGATTTCCTCGCTCTGCAAAACATTCGTAAGGCTCTGGAAGACATGCCAGGTTCCGATTTCTTTTCCACTTGGGATTTCACCGCAGACCCATGCAACTTCGCCGGCGTTTACTGCGACTCCGACAAGATCATTGCGCTCAACCTCGGCGACCCCCGGGCGGGCTCTCCCGGCCTCACCGGCCGCCTCGACCCCGCCGTCGGCAAGCTCTCCGCGCTCGCCGAGTTCACCGTCGTCCCTGGCCGAATATACGGTCCTCTCCCCGAAACGCTCTCCGATTTGAAGAACCTCAGGTTCCTCGGCGTCAACCGCAACTTCATCTCCGGCCAAATTCCGACCAAATTAGGTGATCTCCGCAACCTCCGAACTATCGATCTCAGCTACAACCAGCTCAGCGGACGCATTCCTCCAACGGTAGGAACCTTACCGGAGCTAACAAACCTAATCCTCTGCCATAACCGTCTCTCCGGTTCGGTCCCCCGGTTCGAGTCGCACACACTAACCCGGCTCGATCTGAAGCACAACGGTCTCTCCGGTTCGCTTCCTCCTGATTGCCTCCCTCCTTCCCTCCAGTACCTCTCTCTTTCCTGGAACCAGCTCACCGGCCCAATGGACCGCCACCTGGCCCGTCTCGACCAGCTCAACTATTTGGACCTAAGCCTGAACCAATTCACGGGCCCAATCCCGGGCCGAATATTTTCTTTCCCACTGACAAATCTTCAGTTAGAGAGGAACCAGTTCTCGGGCATGGTTCAGCCCGTGGACCAGGTTTCGATCCCGACCGTTGATCTGAGTTACAACCGGCTGTACGGTCAGATATCGCCGATGCTGGCGACAGTGCAGAATCTTTACCTGAACAACAACCGGTTCACGGGTCGGGTACCGGCTAGCTTCGTGGAGCGGTTGCTGGACGCGAGCATTCAGATACTTTACTTGCAGCATAACTATCTGACGGGGATTGAGATAAGCCCTACGGCGGTGATTCCCGAGAGAAGCTCGCTGTGTCTGCAGTATAACTGCATGGTCCCGCCCGTAGAGACTCCCTGCCCACTTAGGGCTGGTAAGGAGAAAACCAGGCCCACTGCGCAGTGCAATCAGTTGAAGGATTTGAAGGACTAA

Predicted protein sequences of Glyma10g02810

Limit To All Plant Sequences

>Glyma10g02810.2   sequence type=predicted peptide   gene model=Glyma10g02810   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAKCRSSTSPYALFVFFFCFLQVQAILDPADFLALQNIRKALEDMPGSDFFSTWDFTADPCNFAGVYCDSDKIIALNLGDPRAGSPGLTGRLDPAVGKLSALAEFTVVPGRIYGPLPETLSDLKNLRFLGVNRNFISGQIPTKLGDLRNLRTIDLSYNQLSGRIPPTVGTLPELTNLILCHNRLSGSVPRFESHTLTRLDLKHNGLSGSLPPDCLPPSLQYLSLSWNQLTGPMDRHLARLDQLNYLDLSLNQFTGPIPGRIFSFPLTNLQLERNQFSGMVQPVDQVSIPTVDLSYNRLYGQISPMLATVQNLYLNNNRFTGRVPASFVERLLDASIQILYLQHNYLTGIEISPTAVIPERSSLCLQYNCMVPPVETPCPLRAGKEKTRPTAQCNQLKDLKD*

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