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Report for Sequence Feature Glyma10g02760

Feature Type:gene_model
Chromosome:Gm10
Start:1957464
stop:1967936
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G03080AT Annotation by Michelle Graham. TAIR10: BRI1 suppressor 1 (BSU1)-like 1 | chr4:1359935-1365166 REVERSE LENGTH=881 SoyBaseE_val: 0ISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0004721GO-mf Annotation by Michelle Graham. GO Molecular Function: phosphoprotein phosphatase activity SoyBaseN/AISS
GO:0004722GO-mf Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine phosphatase activity SoyBaseN/AISS
GO:0005506GO-mf Annotation by Michelle Graham. GO Molecular Function: iron ion binding SoyBaseN/AISS
GO:0005515GO-mf Annotation by Michelle Graham. GO Molecular Function: protein binding SoyBaseN/AISS
GO:0016787GO-mf Annotation by Michelle Graham. GO Molecular Function: hydrolase activity SoyBaseN/AISS
GO:0030145GO-mf Annotation by Michelle Graham. GO Molecular Function: manganese ion binding SoyBaseN/AISS
KOG0374 KOG Serine/threonine specific protein phosphatase PP1, catalytic subunit JGI ISS
PTHR11668Panther SERINE/THREONINE PROTEIN PHOSPHATASE JGI ISS
PTHR11668:SF17Panther CALMODULIN BINDING PROTEIN JGI ISS
PF00149PFAM Calcineurin-like phosphoesterase JGI ISS
UniRef100_I1JFE9UniRef Annotation by Michelle Graham. Most informative UniRef hit: Serine/threonine-protein phosphatase n=1 Tax=Glycine max RepID=I1JFE9_SOYBN SoyBaseE_val: 0ISS
UniRef100_UPI000233D7E2UniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233D7E2 related cluster n=1 Tax=unknown RepID=UPI000233D7E2 SoyBaseE_val: 0ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma02g17040 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments
Glyma.10g022700 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma10g02760.2   sequence type=CDS   gene model=Glyma10g02760   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGGTCGAAACCGTGGCTGTACCCTGCTCCAACCTATCGAACTATAGAAACTGTCTGGGACACCGATGAAGACGCTCCTGGCCCTCGTTGTGGCCACACCCTCACCGCCGTCGCTGCCACCAAGACTCTAGGCCCCCGCTTGATCTTATTCGGCGGCGCCACCGCCATTGAAGGAGGATCTTCCTCCGCTCCCGGCATTCGATTAGCAGGAGTCACGAATACCGTCCATGCCTATGACGTTCAAAGTAGAAAATGGACTAGTGTTAAACCCGCCGGAGAACCGCCATCTCCCCGGGCTGCTCATGCCGCTGCTGCAGTTGGAACCATGGTTGTTTTTCAGGGTGGGATAGGTCCGGCGGGGCATTCTACCGATGATCTCTATGTGCTTGACTTGACCAATGATAAATACAAATGGCACAGGGTCGTTGTACAAGGGCAAGGACCTGGTCCACGCTATGGCCATGCAATGGACTTGGTTGCTCAGAGATATCTAGTAACTGTCAGCGGAAATGACGGGAAAAGAGTTGTATCTGATGCTTGGGCTTTGGATACTGCTCAAAAACCTTATGTGTGGCAGAAGCTGAACCCAGAAGGTGACAGACCTTCTGCCAGAATGTACGCAACTGCTAGTGCTCGCTCAGATGGAATGTTTTTACTCTGTGGTGGAAGAGACTCTTCTGGAGCTCCACTAGCAGATGCCTATGGACTGCTCATGCATAGGAATGGCCAGTGGGAATGGACCCTTGCACCGGGAGTTTCCCCTTCACCTAGGTATCAACATGCTGCGGTTTTTGTTGGTGCACGATTACATGTTACAGGAGGTGTTCTCAGGGGTGGACGGTCCGTGGAAGGTGAAGCATCCATTGCAGTATTGGACACTGCTGCTGGGGTTTGGTTGGACAGAAATGGCATTGTGTCCTCCTCACGCTCAAACAAAGGTCATGATTATGACCCTCCTTTGGAGCTTATGCGTCGTTGTCGCCATGCAGCAGCAGCTGTTGGTGTTCATATATTTATCTATGGTGGTCTAAGAGGAGATATACTACTAGATGATTTCCTAGTGGCTGAAAATTCGCCATTGCAGCCTGACATTAATTCTTCTGAGAGAGCTTCACCTGTTACAAGCTCCAAACAAAATCAATCTAACTTGACTTATAATGTAACAGCACCAAATTTGGATGGTGGACCAGATACTCCTTCATTTGGTCACTCAGGCATGGACAAAAATTCCTTGGAGAAACTGAGGGAAGCATCAGCTGCTGAAGCTGAGGCAGCGAGTGCTGTCTGGCAAGCTGTGCAGTCTATATCAAGTAATCCAGCTGAAGAAACATCTCTGTCAGATGAAAACTCACAAGCTGCAGAAACAGTTTCAGATGGAAGTGACACTGAGGGAGATGTCCGCCTTCATCCTAGAGCCGTTGTAGTTGCCAAGGAGGCTGTAGGTAACCTAGGTGGAATGGTGAGACAATTATCGCTAGATCAATTTGAAAATGAAAGCAGACGCATGATTCCAGTAAATAATGATTTGCCATATCCTACGAAAAAGTTCACCAGGCAGAAATCTCCTCAGGGTTTACATAAAAAGATAATTTCAACTTTGCTTAGGCCTCGCAACTGGAAAGCTCCTGCAAACAGGCGGTTCTTCTTGGATTCTTATGAAGTGGGTGAACTTTGCTATGCTGCCGAGCAAATATTTATGCATGAACCAACCGTTCTTCAGCTTAAAGCTCCTGTCAAAGTATTTGGTGATCTTCATGGTCAGTTTGGTGATTTGATGCGGCTATTTGATGAATATGGATTTCCTTCTACTGCAGGAGACATCACCTATATTGACTACCTGTTTTTGGGAGATTACGTTGATCGAGGACAGCATAGCTTGGAAACCATTACCTTGCTACTTGCTCTTAAGATCGAATATCCTGAGAATGTTCACTTGATACGGGGAAACCACGAAGCTGCTGACATAAATGCACTATTTGGTTTTCGGATTGAGTGCATTGAAAGAATGGGTGAAAATGATGGGATATGGGCATGGACACGATTCAATCAACTATTTAATTATCTTCCATTAGCTGCTCTTATTGAAAAGAAAATTATCTGCATGCATGGTGGCATTGGAAGATCTATCAATTCAGTAGAAGATATAGAGAAGCTCAAAAGGCCCATAACAATGGATGCAGGATCTATTATTTTAATGGACCTTTTATGGTCTGATCCCACAGAGAATGATAGTGTAGAGGGTTTGAGACCAAATGCTAGAGGCCCAGGGCTTGTCACTTTTGGGCCTGATCGTGTCACAGAATTTTGTAAGAAAAATAAATTGCAGCTCATTATAAGGGCCCATGAGTGTGTCATGGATGGTTTTGAACGATTTGCCCAGGGACAATTAATCACCCTTTTTTCTGCAACCAACTATTGTGGAACTGCGAACAATGCGGGAGCTATACTGGTAGTTGGTAGGGGTTTGGTTGTGGTTCCAAAATTAATTCATCCCATACCACCTCCCCTTCAGTCTCCTGAGACATCTCCTGAGCGTGGTATGGATGAGACATGGATGCAGGAGCTCAATATTCAGAGGCCACCAACTCCTACTCGGGGTCGACCACAGCCTGACCTTGATCGTGGCTCACTAGCATACATATGA

>Glyma10g02760.2   sequence type=predicted peptide   gene model=Glyma10g02760   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGSKPWLYPAPTYRTIETVWDTDEDAPGPRCGHTLTAVAATKTLGPRLILFGGATAIEGGSSSAPGIRLAGVTNTVHAYDVQSRKWTSVKPAGEPPSPRAAHAAAAVGTMVVFQGGIGPAGHSTDDLYVLDLTNDKYKWHRVVVQGQGPGPRYGHAMDLVAQRYLVTVSGNDGKRVVSDAWALDTAQKPYVWQKLNPEGDRPSARMYATASARSDGMFLLCGGRDSSGAPLADAYGLLMHRNGQWEWTLAPGVSPSPRYQHAAVFVGARLHVTGGVLRGGRSVEGEASIAVLDTAAGVWLDRNGIVSSSRSNKGHDYDPPLELMRRCRHAAAAVGVHIFIYGGLRGDILLDDFLVAENSPLQPDINSSERASPVTSSKQNQSNLTYNVTAPNLDGGPDTPSFGHSGMDKNSLEKLREASAAEAEAASAVWQAVQSISSNPAEETSLSDENSQAAETVSDGSDTEGDVRLHPRAVVVAKEAVGNLGGMVRQLSLDQFENESRRMIPVNNDLPYPTKKFTRQKSPQGLHKKIISTLLRPRNWKAPANRRFFLDSYEVGELCYAAEQIFMHEPTVLQLKAPVKVFGDLHGQFGDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEAADINALFGFRIECIERMGENDGIWAWTRFNQLFNYLPLAALIEKKIICMHGGIGRSINSVEDIEKLKRPITMDAGSIILMDLLWSDPTENDSVEGLRPNARGPGLVTFGPDRVTEFCKKNKLQLIIRAHECVMDGFERFAQGQLITLFSATNYCGTANNAGAILVVGRGLVVVPKLIHPIPPPLQSPETSPERGMDETWMQELNIQRPPTPTRGRPQPDLDRGSLAYI*







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