Glyma10g02660 - SoyBase

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Report for Sequence Feature Glyma10g02660

Feature Type:	gene_model
Chromosome:	Gm10
Start:	1894853
stop:	1904481
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma10g02660

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G47940	AT	Annotation by Michelle Graham. TAIR10: DEGP protease 2 \| chr2:19618372-19622164 REVERSE LENGTH=607	SoyBase	E_val: 0	ISS
GO:0006508	GO-bp	Annotation by Michelle Graham. GO Biological Process: proteolysis	SoyBase	N/A	ISS
GO:0009658	GO-bp	Annotation by Michelle Graham. GO Biological Process: chloroplast organization	SoyBase	N/A	ISS
GO:0010075	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of meristem growth	SoyBase	N/A	ISS
GO:0010206	GO-bp	Annotation by Michelle Graham. GO Biological Process: photosystem II repair	SoyBase	N/A	ISS
GO:0019288	GO-bp	Annotation by Michelle Graham. GO Biological Process: isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway	SoyBase	N/A	ISS
GO:0030163	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein catabolic process	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0009533	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stromal thylakoid	SoyBase	N/A	ISS
GO:0009535	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid membrane	SoyBase	N/A	ISS
GO:0009570	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma	SoyBase	N/A	ISS
GO:0009941	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
GO:0004252	GO-mf	Annotation by Michelle Graham. GO Molecular Function: serine-type endopeptidase activity	SoyBase	N/A	ISS
GO:0008236	GO-mf	Annotation by Michelle Graham. GO Molecular Function: serine-type peptidase activity	SoyBase	N/A	ISS
KOG1320	KOG	Serine protease	JGI		ISS
PTHR22939	Panther	SERINE PROTEASE FAMILY S1C HTRA-RELATED	JGI		ISS
PTHR22939:SF1	Panther	SERINE ENDOPEPTIDASE DEGP2	JGI		ISS
PF00089	PFAM	Trypsin	JGI		ISS
UniRef100_B9S3X1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Serine endopeptidase degp2, putative n=1 Tax=Ricinus communis RepID=B9S3X1_RICCO	SoyBase	E_val: 0	ISS
UniRef100_UPI000233C66C	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233C66C related cluster n=1 Tax=unknown RepID=UPI000233C66C	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma10g02660

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma10g02660 not represented in the dataset	Glyma10g02660 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma10g02660

Paralog	Evidence	Comments
Glyma02g17130	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma10g02660 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.10g021800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma10g02660

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma10g02660

Limit To All Plant Sequences

>Glyma10g02660.1   sequence type=CDS   gene model=Glyma10g02660   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGGTTGCACTAACGAGTTGCATTTCCTCATCCTCTGTTCTATTCTCCACAGTTAAATTCCGCTACTCACTCAGACACAGACCCATCGTCGCCTCTTTCTATAACAATAATAATTACCCACTCCGACTTTCCTCTTCTTCTTCTTCTTCTTCCAAATCCAATCGACAAAAGGAAGGTGTTGGGCAGAAGAAGCAGTCAAAAGATGAAAGACCTGCAAGAGGGAATGTGCTCGAACCCCAACAAACTTCTTCTTCTAAACCTTTTGGCATTCAAAGGAAAAATAAGGACCTTATCTTCGACTCCAAGGACCAGCAGGTTGAACCGAGTGCTTTACAAGATTCGGCTTTCCTTAATGCTGTTGTGAAGGTATACTGCACCCATACTGCCCCAGATTATTCACTTCCTTGGCAAAAACAGAGACAATACACAAGTACTGGAAGTGCATTTATGATTGGAGATAGGAAACTATTAACGAATGCACACTGCGTGGAACATGATACACAGGTCAAAGTCAAGAAAAGAGGGGATGACTCAAAATATGTGGCTAAGGTTTTGGCCAGAGGTGTTGACTGCGATATAGCCTTGCTTTCAGTAGAAAGTGAGGAGTTTTGGAGAGATGTGGAACCCCTCAGATTAGGACGTTTGCCACATCTTCAGGATTCTGTAACTGTTGTGGGATATCCTCTTGGAGGAGACACAATTTCAGTGACAAAGGGAGTTGTATCTCGTATAGAGGTCACATCATATGCTCATGGATCATCTGATTTGTTGGGCATTCAAATTGATGCAGCAATAAATCCTGGTAATAGCGGAGGCCCGGCATTCAATGACCAAGGGGAGTGCATTGGAGTAGCATTTCAGGTCCTCAGATCTGATGAGGCTGAGAATATTGGATATGTGATTCCTACAACTGTTGTATCTCATTTTTTGACCGACTATGAAAGGAATGGCAGGTATACTGGTTTCCCTTGCCTTGGAGTACTTATACAGAAGCTAGAGAATCCTGCACTACGTGCATGGTTGAAAGTACAGTCTAATGAGGGTGTATTGGTACGTAGAGTTGAACCAACTTCTGATGCAAATAATGTATTAAAGGAGGGTGATGTGATTGTCAGCTTTGATGATGTTCGTGTTGGTAGTGAAGGAACAGTCCCATTCAGATCAAATGAGCGAATTGCCTTCCACTTCCTCATTAGTCAAAAATTTGCAGGTGATACTGCAGAGCTTGGTATCATCAGAGCAGGGTCATTAATAAAAACTAAAGTTGTTTTAAACTCACGAGTTCATTTGGTTCCCTATCACATTGATGAAGGTCAGCCTTCCTATTTAATAATTGCTGGTTTAGTGTTCACACCCCTCTCAGAGCCATTGATTGAGGAAGAATGTGAAGATTCTATAGGGCTAAAATTATTGGCAAGGGCACGTTATTCATTGGCAAAGTTTAAAGGGGAGCAAATTGTAATTCTTTCACAGGTATTGGCAAATGAAGTCAACATAGGTTATGAAGATATGGGCAATCAGCAGGTTGTAAAATTCAATGGAACTCGAATTAAAAACATTCATCACCTTGCGCACCTCATTGATTCATGCAAAGACAGGTATCTGCGTTTCGAATTTGAAGATAGCTATGTAGCTGTTTTAGAGAAAGAATCTGTTACCGCTGCTTCACCCTCCGTACTGAGTGATTATGGAATCCCATCTGAAAGATCGTCTGATCTTTTGAAACCATATGTGGATGCACTAGAAGTAGAAGGTGACCAACCAGCAGACGAGGAATTTGGTGATAGCCCGGTTTCAAATTATGAATTTGGCCCTGATGGACTACTCTGGGCATAA

Predicted protein sequences of Glyma10g02660

Limit To All Plant Sequences

>Glyma10g02660.1   sequence type=predicted peptide   gene model=Glyma10g02660   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAVALTSCISSSSVLFSTVKFRYSLRHRPIVASFYNNNNYPLRLSSSSSSSSKSNRQKEGVGQKKQSKDERPARGNVLEPQQTSSSKPFGIQRKNKDLIFDSKDQQVEPSALQDSAFLNAVVKVYCTHTAPDYSLPWQKQRQYTSTGSAFMIGDRKLLTNAHCVEHDTQVKVKKRGDDSKYVAKVLARGVDCDIALLSVESEEFWRDVEPLRLGRLPHLQDSVTVVGYPLGGDTISVTKGVVSRIEVTSYAHGSSDLLGIQIDAAINPGNSGGPAFNDQGECIGVAFQVLRSDEAENIGYVIPTTVVSHFLTDYERNGRYTGFPCLGVLIQKLENPALRAWLKVQSNEGVLVRRVEPTSDANNVLKEGDVIVSFDDVRVGSEGTVPFRSNERIAFHFLISQKFAGDTAELGIIRAGSLIKTKVVLNSRVHLVPYHIDEGQPSYLIIAGLVFTPLSEPLIEEECEDSIGLKLLARARYSLAKFKGEQIVILSQVLANEVNIGYEDMGNQQVVKFNGTRIKNIHHLAHLIDSCKDRYLRFEFEDSYVAVLEKESVTAASPSVLSDYGIPSERSSDLLKPYVDALEVEGDQPADEEFGDSPVSNYEFGPDGLLWA*

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