Glyma10g02630 - SoyBase

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Report for Sequence Feature Glyma10g02630

Feature Type:	gene_model
Chromosome:	Gm10
Start:	1860231
stop:	1864062
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma10g02630

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G62980	AT	Annotation by Michelle Graham. TAIR10: F-box/RNI-like superfamily protein \| chr3:23273479-23276181 REVERSE LENGTH=594	SoyBase	E_val: 0	ISS
GO:0002237	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to molecule of bacterial origin	SoyBase	N/A	ISS
GO:0006511	GO-bp	Annotation by Michelle Graham. GO Biological Process: ubiquitin-dependent protein catabolic process	SoyBase	N/A	ISS
GO:0007165	GO-bp	Annotation by Michelle Graham. GO Biological Process: signal transduction	SoyBase	N/A	ISS
GO:0009733	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to auxin stimulus	SoyBase	N/A	ISS
GO:0009734	GO-bp	Annotation by Michelle Graham. GO Biological Process: auxin mediated signaling pathway	SoyBase	N/A	ISS
GO:0010103	GO-bp	Annotation by Michelle Graham. GO Biological Process: stomatal complex morphogenesis	SoyBase	N/A	ISS
GO:0010152	GO-bp	Annotation by Michelle Graham. GO Biological Process: pollen maturation	SoyBase	N/A	ISS
GO:0010311	GO-bp	Annotation by Michelle Graham. GO Biological Process: lateral root formation	SoyBase	N/A	ISS
GO:0016036	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular response to phosphate starvation	SoyBase	N/A	ISS
GO:0042752	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of circadian rhythm	SoyBase	N/A	ISS
GO:0048443	GO-bp	Annotation by Michelle Graham. GO Biological Process: stamen development	SoyBase	N/A	ISS
GO:0000151	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: ubiquitin ligase complex	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0019005	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: SCF ubiquitin ligase complex	SoyBase	N/A	ISS
GO:0000822	GO-mf	Annotation by Michelle Graham. GO Molecular Function: inositol hexakisphosphate binding	SoyBase	N/A	ISS
GO:0004842	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ubiquitin-protein ligase activity	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
GO:0010011	GO-mf	Annotation by Michelle Graham. GO Molecular Function: auxin binding	SoyBase	N/A	ISS
KOG1947	KOG	Leucine rich repeat proteins, some proteins contain F-box	JGI		ISS
PTHR23125	Panther	F-BOX/LEUCINE RICH REPEAT PROTEIN	JGI		ISS
PTHR23125:SF17	Panther	GRR1-RELATED, ARATH	JGI		ISS
UniRef100_E9NZT3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: F-box/leucine rich repeat protein n=1 Tax=Phaseolus vulgaris RepID=E9NZT3_PHAVU	SoyBase	E_val: 0	ISS
UniRef100_UPI000233D510	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233D510 related cluster n=1 Tax=unknown RepID=UPI000233D510	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma10g02630

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma10g02630

Paralog	Evidence	Comments
Glyma02g17170	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma10g02630 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.10g021500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma10g02630

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma10g02630

Limit To All Plant Sequences

>Glyma10g02630.2   sequence type=transcript   gene model=Glyma10g02630   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTCTTCCTCTCCACCCCACCTATTTAACCCTAGTTACTTTCTAACCTCACCCGCTACATCACAAACTCCTTATCCTCCTCTTCTGCCAACTTCAACAACACAGACACTACCTCCTCTCCTCTCCTCGCTCTTCCAATGCCGTCTTCTCAGATCTAGTTACTTTCTATTCTGCGAGCTTTCACTACTGCTTCATTCGGAAAACGACAGCGTTTTTGGTAGGGTTGTTGTATTCCATTGGACATGCGGCCGAGAGTAAATTACTCCTTCCCCGAGGAGGTGCTGGAGCACGTGTTCTCCTTCATCGAGTGCGACAAGGACCGAGGCTCGATCTCCCTCGTCTGCAAGTCCTGGTACGAGATCGAGCGCTGGTGTCGCCGGAGAGTCTTCGTCGGAAACTGCTACGCCGTCTCTCCGGCCACCGTCGTCAACCGCTTCCCCAAGGTTAGATCCATCGCCATCAAGGGGAAGCCGCACTTCGCCGACTTCAATTTGGTCCCCGAGGGTTGGGGCGCTTATGTGGGCCCTTGGATCAAGGCCATGGCCGCTGCCTACCCCTGGCTTCAGGAGATCAGGCTCAAGAGGATGGTTATCTCCGACGAATGCTTGGAACTCATCGCCAAATCGTTTAAGAACTTCCAAGTCTTGGTTCTCACCTCTTGCGAGGGTTTCACCACTGACGGACTTGCTGCCATTGCCGCCAATTGCAGGAATTTGAGGGAGTTGGAGTTGCGGGAGAGTGAGGTGGACGACATTTGTGGGCATTGGCTGAGCCATTTTCCTGATTCATACACATCGTTGGTTTCCCTTAACATTTCTTGCTTAGGCAATGAGGTGAATTTGTCTGCCCTAGAGCGCCTTGTTAGTAGGTGTCCCAACCTGCAGACTCTCCGCCTCAACCGTGCTGTGCCGCTAGACAGGCTTGCCAACCTTCTTCGCGGAGCTCCTCAATTGGTTGAGTTAGGCACGGGAACCTACACGACTGAGATGCGACCGGAGGTCTTCACAAACCTGGCGGAGGCATTTTCTGGGTGCAAGCAATTGAAGGGCTTGTCTGGATTTTGGGACGTTCTCCCATCCTACCTTCCAGCTGTCTATCCCATCTGCTCCAACCTGACATCACTGAACTTGAGTTATGCAACTATTCAAAGCCCCGATCTTATCAAGCTTGTTGGTCAATGTGAGAGTTTGCAGCGTTTATGGGTGCTGGATTACATAGAAGATGCTGGTCTTGAAGTGATTGCTGCATCGTGTAAGGATCTGAGGGAGTTGAGGGTGTTTCCCTCTGACCCGTTTGGGTTAGAACCAAATGTAGCATTGACAGAACAGGGCCTTGTATCCGTGTCTGAAGGCTGCACCAAGCTCCAGTCAGTTCTATATTTTTGTCGTCAAATGACTAATTCTGCCTTGGATACAATTGCCAGGAACAGGCCTAATATGACACGTTTTAGACTATGTATTATCGAGCCTCAAGCTCCTGACCATCTTACCCATCAACCTCTGGATGCTGGTTTTGGAGCTATTGTAGAGCATTGCAAGGATCTTCAGCGCCTTTCCCTTTCCGGGCTTCTTACTGACCGTGTTTTTGAATATATTGGGACTTATGGCAAGAAGCTTGAGATGCTTTCTGTGGCTTTCGCGGGAGATAGCGATCTGGGACTCCATCATGTGCTGTCTGGGTGTGACAACCTTAGGAAGCTGGAGATCAGGGACTGCCCCTTTGGTGACAAAGCCCTCTTGGCCAATGCTGCAAAGCTGGAGACAATGCGATCCCTTTGGATGTCCTCTTGCTTGGTGAGTTATGGAGCATGTAAACTGCTGGGTCAGAAACTGCCAAGACTTAATGTCGAAGTCATTGATGAAAGAGGACCTCCAGATTCAAGGCCGGAGAGTAGTCCTGTTGAGAAGTTATACATGTACAGGACTGTTTCTGGGCCAAGATTGGACATGCCAGGCTATGTATGGAGAATGCAAGATGATTCTGCATTAAGGATTTCTTGAGTGATTGTGCTGTGGAATGAATGAGCCGTGGAATTTATGAGCATTTGATGTGGGAATTGTTGGTGCAGAGTCGATTGGTGCTGTGGAATAAACATTCGGAATGACTAAATGACGCATATGAACCGAAGAATGGCTCTACTGGTTGAAAGGTTTTTGCATTTTAACAGAGTGGCTTAAGATTGTTTCCATCGGTTTTTACATATTTGCTTCCAGGTCAATTTTTGGTTGCAAACGATAGGGCATGATAAAATTTCTCGTTCAAAAATAGGGTTATGGCTGAAGATAGTATAACTTGGAAATTTACCTAAGAAGTAACATTAATCTGTAACCTTGTTACAAGTGAGGAAGCTGTAATGATGTCATTAATCTCCATCACTAAAATGAAGTTTTCTTTTCAAGCAGTTTTCGAAGTTTGTTTGATCTAGGTTCCTGCGACAGATTGATTTTATAAAATAATAAACACATAATTTTAAAAGATTTGATGCTAAAATATATAATTTAAAAGAAAATTTAGATAACTTGGATGTTTAGAAATGGTAAAATATTCTGTAAAGAAAAAGAGATGGTAAAATAGTTTTTTGAAGTGTAATTATATTGTTAAATAATTTTAAAATTTATTTTCCAATTAATTAGCTGATTAAAAATTTTAATTCTACTGAAATCTAAAATTGAGAAAGAGCATTATTCTATTTGTGATGGGCGACATACTGGCGACGGTGCAGGCCTGGACAGTCATCAAATTTGAAAACCTCGTATCCCTTTTTGCTATAAGCTCGTTGCTGTATTTTTTGAGGTAGTATTTTTGTGGAATGTATCTGTTTTTTAGAGGGTTAGAATGTGTTTGTTGATGTTTAGGTAACAG

Coding sequences of Glyma10g02630

Limit To All Plant Sequences

>Glyma10g02630.1   sequence type=CDS   gene model=Glyma10g02630   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAATTGTAGGAATTTGAGGGAGTTGGAGTTGCGGGAGAGTGAGGTGGACGACATTTGTGGGCATTGGCTGAGCCATTTTCCTGATTCATACACATCGTTGGTTTCCCTTAACATTTCTTGCTTAGGCAATGAGGTGAATTTGTCTGCCCTAGAGCGCCTTGTTAGTAGGTGTCCCAACCTGCAGACTCTCCGCCTCAACCGTGCTGTGCCGCTAGACAGGCTTGCCAACCTTCTTCGCGGAGCTCCTCAATTGGTTGAGTTAGGCACGGGAACCTACACGACTGAGATGCGACCGGAGGTCTTCACAAACCTGGCGGAGGCATTTTCTGGGTGCAAGCAATTGAAGGGCTTGTCTGGATTTTGGGACGTTCTCCCATCCTACCTTCCAGCTGTCTATCCCATCTGCTCCAACCTGACATCACTGAACTTGAGTTATGCAACTATTCAAAGCCCCGATCTTATCAAGCTTGTTGGTCAATGTGAGAGTTTGCAGCGTTTATGGGTGCTGGATTACATAGAAGATGCTGGTCTTGAAGTGATTGCTGCATCGTGTAAGGATCTGAGGGAGTTGAGGGTGTTTCCCTCTGACCCGTTTGGGTTAGAACCAAATGTAGCATTGACAGAACAGGGCCTTGTATCCGTGTCTGAAGGCTGCACCAAGCTCCAGTCAGTTCTATATTTTTGTCGTCAAATGACTAATTCTGCCTTGGATACAATTGCCAGGAACAGGCCTAATATGACACGTTTTAGACTATGTATTATCGAGCCTCAAGCTCCTGACCATCTTACCCATCAACCTCTGGATGCTGGTTTTGGAGCTATTGTAGAGCATTGCAAGGATCTTCAGCGCCTTTCCCTTTCCGGGCTTCTTACTGACCGTGTTTTTGAATATATTGGGACTTATGGCAAGAAGCTTGAGATGCTTTCTGTGGCTTTCGCGGGAGATAGCGATCTGGGACTCCATCATGTGCTGTCTGGGTGTGACAACCTTAGGAAGCTGGAGATCAGGGACTGCCCCTTTGGTGACAAAGCCCTCTTGGCCAATGCTGCAAAGCTGGAGACAATGCGATCCCTTTGGATGTCCTCTTGCTTGGTGAGTTATGGAGCATGTAAACTGCTGGGTCAGAAACTGCCAAGACTTAATGTCGAAGTCATTGATGAAAGAGGACCTCCAGATTCAAGGCCGGAGAGTAGTCCTGTTGAGAAGTTATACATGTACAGGACTGTTTCTGGGCCAAGATTGGACATGCCAGGCTATGTATGGAGAATGCAAGATGATTCTGCATTAAGGATTTCTTGA

>Glyma10g02630.2   sequence type=CDS   gene model=Glyma10g02630   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCGGCCGAGAGTAAATTACTCCTTCCCCGAGGAGGTGCTGGAGCACGTGTTCTCCTTCATCGAGTGCGACAAGGACCGAGGCTCGATCTCCCTCGTCTGCAAGTCCTGGTACGAGATCGAGCGCTGGTGTCGCCGGAGAGTCTTCGTCGGAAACTGCTACGCCGTCTCTCCGGCCACCGTCGTCAACCGCTTCCCCAAGGTTAGATCCATCGCCATCAAGGGGAAGCCGCACTTCGCCGACTTCAATTTGGTCCCCGAGGGTTGGGGCGCTTATGTGGGCCCTTGGATCAAGGCCATGGCCGCTGCCTACCCCTGGCTTCAGGAGATCAGGCTCAAGAGGATGGTTATCTCCGACGAATGCTTGGAACTCATCGCCAAATCGTTTAAGAACTTCCAAGTCTTGGTTCTCACCTCTTGCGAGGGTTTCACCACTGACGGACTTGCTGCCATTGCCGCCAATTGCAGGAATTTGAGGGAGTTGGAGTTGCGGGAGAGTGAGGTGGACGACATTTGTGGGCATTGGCTGAGCCATTTTCCTGATTCATACACATCGTTGGTTTCCCTTAACATTTCTTGCTTAGGCAATGAGGTGAATTTGTCTGCCCTAGAGCGCCTTGTTAGTAGGTGTCCCAACCTGCAGACTCTCCGCCTCAACCGTGCTGTGCCGCTAGACAGGCTTGCCAACCTTCTTCGCGGAGCTCCTCAATTGGTTGAGTTAGGCACGGGAACCTACACGACTGAGATGCGACCGGAGGTCTTCACAAACCTGGCGGAGGCATTTTCTGGGTGCAAGCAATTGAAGGGCTTGTCTGGATTTTGGGACGTTCTCCCATCCTACCTTCCAGCTGTCTATCCCATCTGCTCCAACCTGACATCACTGAACTTGAGTTATGCAACTATTCAAAGCCCCGATCTTATCAAGCTTGTTGGTCAATGTGAGAGTTTGCAGCGTTTATGGGTGCTGGATTACATAGAAGATGCTGGTCTTGAAGTGATTGCTGCATCGTGTAAGGATCTGAGGGAGTTGAGGGTGTTTCCCTCTGACCCGTTTGGGTTAGAACCAAATGTAGCATTGACAGAACAGGGCCTTGTATCCGTGTCTGAAGGCTGCACCAAGCTCCAGTCAGTTCTATATTTTTGTCGTCAAATGACTAATTCTGCCTTGGATACAATTGCCAGGAACAGGCCTAATATGACACGTTTTAGACTATGTATTATCGAGCCTCAAGCTCCTGACCATCTTACCCATCAACCTCTGGATGCTGGTTTTGGAGCTATTGTAGAGCATTGCAAGGATCTTCAGCGCCTTTCCCTTTCCGGGCTTCTTACTGACCGTGTTTTTGAATATATTGGGACTTATGGCAAGAAGCTTGAGATGCTTTCTGTGGCTTTCGCGGGAGATAGCGATCTGGGACTCCATCATGTGCTGTCTGGGTGTGACAACCTTAGGAAGCTGGAGATCAGGGACTGCCCCTTTGGTGACAAAGCCCTCTTGGCCAATGCTGCAAAGCTGGAGACAATGCGATCCCTTTGGATGTCCTCTTGCTTGGTGAGTTATGGAGCATGTAAACTGCTGGGTCAGAAACTGCCAAGACTTAATGTCGAAGTCATTGATGAAAGAGGACCTCCAGATTCAAGGCCGGAGAGTAGTCCTGTTGAGAAGTTATACATGTACAGGACTGTTTCTGGGCCAAGATTGGACATGCCAGGCTATGTATGGAGAATGCAAGATGATTCTGCATTAAGGATTTCTTGA

Predicted protein sequences of Glyma10g02630

Limit To All Plant Sequences

>Glyma10g02630.1   sequence type=predicted peptide   gene model=Glyma10g02630   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNCRNLRELELRESEVDDICGHWLSHFPDSYTSLVSLNISCLGNEVNLSALERLVSRCPNLQTLRLNRAVPLDRLANLLRGAPQLVELGTGTYTTEMRPEVFTNLAEAFSGCKQLKGLSGFWDVLPSYLPAVYPICSNLTSLNLSYATIQSPDLIKLVGQCESLQRLWVLDYIEDAGLEVIAASCKDLRELRVFPSDPFGLEPNVALTEQGLVSVSEGCTKLQSVLYFCRQMTNSALDTIARNRPNMTRFRLCIIEPQAPDHLTHQPLDAGFGAIVEHCKDLQRLSLSGLLTDRVFEYIGTYGKKLEMLSVAFAGDSDLGLHHVLSGCDNLRKLEIRDCPFGDKALLANAAKLETMRSLWMSSCLVSYGACKLLGQKLPRLNVEVIDERGPPDSRPESSPVEKLYMYRTVSGPRLDMPGYVWRMQDDSALRIS*

>Glyma10g02630.2   sequence type=predicted peptide   gene model=Glyma10g02630   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MRPRVNYSFPEEVLEHVFSFIECDKDRGSISLVCKSWYEIERWCRRRVFVGNCYAVSPATVVNRFPKVRSIAIKGKPHFADFNLVPEGWGAYVGPWIKAMAAAYPWLQEIRLKRMVISDECLELIAKSFKNFQVLVLTSCEGFTTDGLAAIAANCRNLRELELRESEVDDICGHWLSHFPDSYTSLVSLNISCLGNEVNLSALERLVSRCPNLQTLRLNRAVPLDRLANLLRGAPQLVELGTGTYTTEMRPEVFTNLAEAFSGCKQLKGLSGFWDVLPSYLPAVYPICSNLTSLNLSYATIQSPDLIKLVGQCESLQRLWVLDYIEDAGLEVIAASCKDLRELRVFPSDPFGLEPNVALTEQGLVSVSEGCTKLQSVLYFCRQMTNSALDTIARNRPNMTRFRLCIIEPQAPDHLTHQPLDAGFGAIVEHCKDLQRLSLSGLLTDRVFEYIGTYGKKLEMLSVAFAGDSDLGLHHVLSGCDNLRKLEIRDCPFGDKALLANAAKLETMRSLWMSSCLVSYGACKLLGQKLPRLNVEVIDERGPPDSRPESSPVEKLYMYRTVSGPRLDMPGYVWRMQDDSALRIS*

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