Glyma10g02600 - SoyBase

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Report for Sequence Feature Glyma10g02600

Feature Type:	gene_model
Chromosome:	Gm10
Start:	1829290
stop:	1830324
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma10g02600

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G62950	AT	Annotation by Michelle Graham. TAIR10: Thioredoxin superfamily protein \| chr3:23266303-23266614 FORWARD LENGTH=103	SoyBase	E_val: 2.00E-53	ISS
GO:0045454	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell redox homeostasis	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0009055	GO-mf	Annotation by Michelle Graham. GO Molecular Function: electron carrier activity	SoyBase	N/A	ISS
GO:0015035	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein disulfide oxidoreductase activity	SoyBase	N/A	ISS
KOG1752	KOG	Glutaredoxin and related proteins	JGI		ISS
PTHR10168	Panther	GLUTAREDOXIN	JGI		ISS
PF00462	PFAM	Glutaredoxin	JGI		ISS
UniRef100_C6SX02	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6SX02_SOYBN	SoyBase	E_val: 2.00E-69	ISS
UniRef100_E9NZT9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Glutaredoxin n=1 Tax=Phaseolus vulgaris RepID=E9NZT9_PHAVU	SoyBase	E_val: 1.00E-62	ISS

Expression Patterns of Glyma10g02600

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma10g02600 not represented in the dataset	Glyma10g02600 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma10g02600

Paralog	Evidence	Comments
Glyma02g17200	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma10g02600 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.10g021200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma10g02600

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma10g02600

Limit To All Plant Sequences

>Glyma10g02600.1   sequence type=CDS   gene model=Glyma10g02600   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATAGGGTAAGAGAGTTGGCATCAAAGAAGGCAGCAGTTATATTCACCAAGAGTTCATGTTACATGTGCCACAGCATCACGCAACTGTTCTATGAGCTTGGAGCAAGCCCAGCAGTGCATGAGCTAGACAAGGATGCATATGGGAGGGAAATGGAGTGGGCTTTGAGGAGCATGGGGTGCAACCCTTCAGTGCCAGCAGTGTTCATTGGTGGAAAATTTGTAGGCTCTTCAAAGGATGTCATATCCCTCCATGTTGATGGCTCTCTCAAACAAATGCTCATGGCTGCAAAAGCCATATGGTTCTAG

Predicted protein sequences of Glyma10g02600

Limit To All Plant Sequences

>Glyma10g02600.1   sequence type=predicted peptide   gene model=Glyma10g02600   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDRVRELASKKAAVIFTKSSCYMCHSITQLFYELGASPAVHELDKDAYGREMEWALRSMGCNPSVPAVFIGGKFVGSSKDVISLHVDGSLKQMLMAAKAIWF*

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