SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research



Report for Sequence Feature Glyma10g02560

Feature Type:gene_model
Chromosome:Gm10
Start:1795045
stop:1800348
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G03010AT Annotation by Michelle Graham. TAIR10: Phototropic-responsive NPH3 family protein | chr1:693480-696188 FORWARD LENGTH=634 SoyBaseE_val: 0ISS
GO:0009416GO-bp Annotation by Michelle Graham. GO Biological Process: response to light stimulus SoyBaseN/AISS
GO:0009860GO-bp Annotation by Michelle Graham. GO Biological Process: pollen tube growth SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0004871GO-mf Annotation by Michelle Graham. GO Molecular Function: signal transducer activity SoyBaseN/AISS
PTHR13690Panther KELCH-RELATED JGI ISS
PTHR13690:SF174Panther KELCH-RELATED JGI ISS
PF00651PFAM BTB/POZ domain JGI ISS
PF03000PFAM NPH3 family JGI ISS
UniRef100_E9NZU3UniRef Annotation by Michelle Graham. Most informative UniRef hit: NPH3 family protein n=1 Tax=Phaseolus vulgaris RepID=E9NZU3_PHAVU SoyBaseE_val: 0ISS
UniRef100_UPI000233D396UniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233D396 related cluster n=1 Tax=unknown RepID=UPI000233D396 SoyBaseE_val: 0ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma02g17240 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments
Glyma.10g020800 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma10g02560.2   sequence type=CDS   gene model=Glyma10g02560   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGAGTGGTCACTGTTGGAGAATTGAAGACTAGCATCTCAGGGAAGAGGACCTTTCGTCCAAGTTCAAGCATAAGGCATGCCACTGAGTGGCCAATATCTGATGTCTCTAGTGATCTCACCATCGAAGTAGGAGCTTCAAGCTTTGCACTTCACAAGTTTCCTCTTGTTTCCAGGAGTGGAAGGCTTCGGAAAATGTTGTTAGAAACAAAAGATTCAAAAGTTTCGCGCATTAGTCTCCCAAACTTGCCAGGTGGTGCAGAGGCATTTGAGCTGGCTGCCAAATTCTGTTATGGGATCAATGTTGAGTTCACTCTCTCCAATGTTGCCATGCTAAAATGTGTAGCGCATTTCCTAGAAATGACAGAAGAGTTTGCAGAGAAAAACTTGGAGACGCAAGCCGAAGCATATCTAAAGGAGACAGTGCTCCCAAATATATCAAACACAATATCTGTTCTTCACCGTTGTGAATCTCTTGTTCCCATTTCAGAAGAGATTAGCCTTGTCAGCAGACTAATCAATGCAATTGCAAGCAATGCATGTAAAGAACAACTCACCACTGGTTTGCAAAAACTGGACCACAACTTCCCTTCTAAAACCGCCTCAAACATGGAACCCGAAACACCCTCAGAATGGTGGGGGAAATCTCTCAATGTTCTTAGCCTTGATTTCTTCCAAAGAGTTTTGTCTGCAGTGAAGTCAAAGGGACTAAAACAAGACATGATCAGCAAAATTTTGATAAACTATGCACATAATTCCCTTCAAGGGATTGTTAGGGACCACCAAGCAGTGAAAGCATGTTTTCCTGACTTGGAAGTACAAAAGAAACAAAGAGTCATTGTTGAAGCAATAGCTGGCTTACTACCCACTCAATCAAGGAAAAGCCTAGTTCCTATGGCATTTCTCTCAAGTTTGTTGAAAGCTGCAATAGCTGCATCAGCATCCACTTCTTGCAGATCTGATTTGGAGAAAAGGATTGGTCTACAACTTGACCAGGCTATTCTTGAAGACATCCTAATCGCAACAAATTCACATCAAAACACACATGGGGCTATTTATGACACGGATTCAATTTTGAGGATTTTTTCCAATTTTCTGAACTTGGATGAGGAGGATGAAGATGATAATAATGGTCACTTGAGAGATGAAAGTGAAATGGTTTATGACTTTGACAGCCCCGGATCTCCAAAACAAAGCTCAATTCTAAAGGTATCCAAATTAATGGACAACTATCTTGCTGAAGTGGCACTAGACCCAAACTTGTTGCCATCAAAGTTCATATCCCTTGCTGAACTACTTCCAGATCATGCACGTATTGTGAGTGATGGGCTCTATAGAGCTGTTGATATCTTCCTTAAGGTTCATCCAAACATAAAGGACTCAGAACGGTACCGGCTATGCAAAACCATTGATTGCCAGAAAATGTCTCAAGAAGCATGCAGCCATGCAGCACAGAATGAAAGGCTACCAGTGCAGATGGCAGTTCAGGTTCTATACTTTGAGCAAATAAGGCTCCGCAATGCCATGAATGGAGGGCACAACCAATTGTTCTTTGGAGGAGGACTTAATGGTCCATTCCCTCAACGCTCAGGGAGTGGTGCAGGAAGTGGAGCCATTTCTCCGAGAGACAACTATGCATCAGTGAGAAGGGAGAACCGAGAGCTGAAGCTAGAAGTTGCAAGAATGAGAATGAGGCTCACTGACTTGGAGAAAGACCATGTCAACATGAAGCAGGAGCTAGTGAGGTCTCACCCTGCCAACAAGCTATTCAAATCATTCACCAAAAAACTAAGCAAGCTAAATGCTATGTTTCGGATTAACAGTATTAAGCCAGGTTCTGAGAGTCGCTTCCCTTTTCCTAAGAGAAGGCGTCACTCAGTTTCATGA

>Glyma10g02560.2   sequence type=predicted peptide   gene model=Glyma10g02560   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGVVTVGELKTSISGKRTFRPSSSIRHATEWPISDVSSDLTIEVGASSFALHKFPLVSRSGRLRKMLLETKDSKVSRISLPNLPGGAEAFELAAKFCYGINVEFTLSNVAMLKCVAHFLEMTEEFAEKNLETQAEAYLKETVLPNISNTISVLHRCESLVPISEEISLVSRLINAIASNACKEQLTTGLQKLDHNFPSKTASNMEPETPSEWWGKSLNVLSLDFFQRVLSAVKSKGLKQDMISKILINYAHNSLQGIVRDHQAVKACFPDLEVQKKQRVIVEAIAGLLPTQSRKSLVPMAFLSSLLKAAIAASASTSCRSDLEKRIGLQLDQAILEDILIATNSHQNTHGAIYDTDSILRIFSNFLNLDEEDEDDNNGHLRDESEMVYDFDSPGSPKQSSILKVSKLMDNYLAEVALDPNLLPSKFISLAELLPDHARIVSDGLYRAVDIFLKVHPNIKDSERYRLCKTIDCQKMSQEACSHAAQNERLPVQMAVQVLYFEQIRLRNAMNGGHNQLFFGGGLNGPFPQRSGSGAGSGAISPRDNYASVRRENRELKLEVARMRMRLTDLEKDHVNMKQELVRSHPANKLFKSFTKKLSKLNAMFRINSIKPGSESRFPFPKRRRHSVS*







Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo