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Report for Sequence Feature Glyma10g02480

Feature Type:gene_model
Chromosome:Gm10
Start:1745512
stop:1746297
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma10g02480
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G47810AT Annotation by Michelle Graham. TAIR10: nuclear factor Y, subunit B5 | chr2:19582938-19583420 REVERSE LENGTH=160 SoyBaseE_val: 1.00E-58ISS
GO:0006355GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0005622GO-cc Annotation by Michelle Graham. GO Cellular Compartment: intracellular SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003677GO-mf Annotation by Michelle Graham. GO Molecular Function: DNA binding SoyBaseN/AISS
GO:0003700GO-mf Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity SoyBaseN/AISS
GO:0043565GO-mf Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding SoyBaseN/AISS
PTHR11064Panther TATA-BINDING PROTEIN-ASSOCIATED PHOSPHOPROTEIN JGI ISS
PTHR11064:SF9Panther CCAAT-BINDING TRANSCRIPTION FACTOR SUBUNIT A JGI ISS
PF00808PFAM Histone-like transcription factor (CBF/NF-Y) and archaeal histone JGI ISS
UniRef100_I1L7X0UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1L7X0_SOYBN SoyBaseE_val: 3.00E-103ISS
UniRef100_I3TAW4UniRef Annotation by Michelle Graham. Most informative UniRef hit: Nuclear transcription factor Y subunit B6 n=1 Tax=Medicago truncatula RepID=I3TAW4_MEDTR SoyBaseE_val: 2.00E-66ISS

Expression Patterns of Glyma10g02480
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma10g02480
ParalogEvidenceComments
Glyma02g17310 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma10g02480 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.10g020100 Wm82.a2.v1IGC As supplied by JGI

References for Glyma10g02480
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma10g02480
>Glyma10g02480.1   sequence type=CDS   gene model=Glyma10g02480   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTGACAACATAGGCAAAGTCTTAGACAGAGAAGGCTTTAAGTACAACTTCACAGCTTCAGCAAGTGGCACATCTGCACAAGATGGGGTGATTAAGGAGCAAGATCGGTTGCTTCCAATAGCTAATGTGGGGCGCATCATGAAGCAAATCCTTCCTCCCAACGCCAAGATCTCAAAGGAAGCTAAAGAAACCATGCAAGAAAGTGTGTCCGAGTTCATTAGCTTTGTCACTGGGGAAGCTTCTGACAAGTGTCACAAGGAGAAGCGCAAGACCGTGAATGGTGACGATATTTGCTGGGCCCTTGCTACTTTAGGGTTTGATGACTACTCTGAGCCACTTAAAAGGTACTTGTATAAGTATAGGGAGATGGAGGGGGAGAGAGCAAATCAAAATAAGGGTAGCAATGGTTATGAAAACAACATTGCAAACATATAA
Predicted protein sequences of Glyma10g02480
>Glyma10g02480.1   sequence type=predicted peptide   gene model=Glyma10g02480   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGDNIGKVLDREGFKYNFTASASGTSAQDGVIKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQESVSEFISFVTGEASDKCHKEKRKTVNGDDICWALATLGFDDYSEPLKRYLYKYREMEGERANQNKGSNGYENNIANI*






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