Glyma10g02470 - SoyBase

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Report for Sequence Feature Glyma10g02470

Feature Type:	gene_model
Chromosome:	Gm10
Start:	1736586
stop:	1739534
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma10g02470

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G13420	AT	Annotation by Michelle Graham. TAIR10: high affinity K+ transporter 5 \| chr4:7797038-7802174 REVERSE LENGTH=785	SoyBase	E_val: 5.00E-120	ISS
GO:0006813	GO-bp	Annotation by Michelle Graham. GO Biological Process: potassium ion transport	SoyBase	N/A	ISS
GO:0071805	GO-bp	Annotation by Michelle Graham. GO Biological Process: potassium ion transmembrane transport	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0009674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: potassium:sodium symporter activity	SoyBase	N/A	ISS
GO:0015079	GO-mf	Annotation by Michelle Graham. GO Molecular Function: potassium ion transmembrane transporter activity	SoyBase	N/A	ISS
PF02705	PFAM	K+ potassium transporter	JGI		ISS
UniRef100_G7KRU2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Potassium transporter n=1 Tax=Medicago truncatula RepID=G7KRU2_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI000233C667	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233C667 related cluster n=1 Tax=unknown RepID=UPI000233C667	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma10g02470

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma10g02470 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.10g020000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma10g02470

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma10g02470

Limit To All Plant Sequences

>Glyma10g02470.2   sequence type=CDS   gene model=Glyma10g02470   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACAGAAGTAGAAGTATTGAAAGAAATCAAAAGGAAAAATCGCAAGAAACTGAGCAAAGATGTATTTAATTGTTTCTGTCGTTTGGATGGATCATGCGATTCGGAACTGATAAAAGTAGGTTACAGCTTCGCTCCAATAATTTGTGTGTGGTTCGCCTTCATCGGAGGAATTGGTGTATACAATTTTATCAAGTATGATCCAACAGTTGTCAAGGCAATAAATCTAAAAAACATTGTAGATTATTTTAGAAGGAACAAGAAAGATGCTTTGATTTCACTTGGTGGTGTTGTGTTGGCCATAACAGGAACTGAAGCACTATTTGCTGATGCTGGGCATTTCACAGTCCGCTTCATACAGATAAGCATGTGCTCTGTAATATACCCTGCTCTCATACTTGCCTACACTGGACAAGCCTCATTTCTTCGCAAAAACAATGAACTTCTAACATATTCTGCTCAACCAATTGAGTTAAATCCTTTTGATCCACCTATAATCGTACAAGATAGTCAATCCTATCCTTTGTATTGGCCAATGTTTGTTATTGCTATTATGGCATCCATCATTGCTTCTAAAGCCATGATCTTCGGGACTTTCTCTATCATCCAACAATCCCTCGCTCTAGGATGCTTTCCTTTCTATGTCCCCGAAATCAATTTCATTTTCATGATTGCATGTGTTGCAGTCACAGCTGGATTAAAAAGTACCACAAAAATTGTCAAAGCTTATGGGATAGCAGTGGTGTTTGTAATGACACTTACATCTGCTTTGCTGGTGCTAATCATGATCATGATATGGAAGAGTCACATACTTTTTGTTATCAGCTATGTGCTTATTATTGGTTCTGTTGAACTTATCTACCTAAGCTCGTACTATTATGAATTGGATCACAAGATTTCTCCACAGAAGCTTAAGGAGATTGTTACTGGGAGAAACTTAGTTCGAATGCATGGCTTTCCACCTATTTTCAAGCATTATGTGACAAACATTCCTGCACTTCACTCTGTGGTTGTCTTTGTGTCCATCAAATCATTGCCTATTAGCAAAATTCCTGTAGAAGAGAGGTTTCTATTTCGCCAAGTGGAACACGAAGAAATCAATCAAGAGCCTTTTGAGCATTTGTTGGTTAAGAGGCTGAAGGAGTTTATTGGTTGTGGATTTTTGGCGTCCCAAAGAGTGATAGAAGATGGTAAAACAGAAGAAAAAATAAATAGTGGTGATAAAGAGAGAGTGGTGCAAGAGGTGGAAGCAGTTGAAAAAGCAGTGAGAGGAGGTGTTGTTCACTTGATTGGTGAAAGTGAGATGGTTGCTAGCAAAGGAGCTGGCATATGGAAAAGGATTCTGATAGATTATGCTTACAATTTCTTGAAGAAGAATTTGAGGCAAAGTGATAAAGTATTTGATATTCCTCATAAGCGTATGGTCAAAGTGGGAATGACATATGAACTTTAA

Predicted protein sequences of Glyma10g02470

Limit To All Plant Sequences

>Glyma10g02470.2   sequence type=predicted peptide   gene model=Glyma10g02470   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTEVEVLKEIKRKNRKKLSKDVFNCFCRLDGSCDSELIKVGYSFAPIICVWFAFIGGIGVYNFIKYDPTVVKAINLKNIVDYFRRNKKDALISLGGVVLAITGTEALFADAGHFTVRFIQISMCSVIYPALILAYTGQASFLRKNNELLTYSAQPIELNPFDPPIIVQDSQSYPLYWPMFVIAIMASIIASKAMIFGTFSIIQQSLALGCFPFYVPEINFIFMIACVAVTAGLKSTTKIVKAYGIAVVFVMTLTSALLVLIMIMIWKSHILFVISYVLIIGSVELIYLSSYYYELDHKISPQKLKEIVTGRNLVRMHGFPPIFKHYVTNIPALHSVVVFVSIKSLPISKIPVEERFLFRQVEHEEINQEPFEHLLVKRLKEFIGCGFLASQRVIEDGKTEEKINSGDKERVVQEVEAVEKAVRGGVVHLIGESEMVASKGAGIWKRILIDYAYNFLKKNLRQSDKVFDIPHKRMVKVGMTYEL*

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