Report for Sequence Feature Glyma10g02460
Feature Type: gene_model
Chromosome: Gm10
Start: 1731630
stop: 1733011
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma10g02460
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT3G62760 AT
Annotation by Michelle Graham. TAIR10: Glutathione S-transferase family protein | chr3:23217425-23218246 REVERSE LENGTH=219
SoyBase E_val: 4.00E-90 ISS
GO:0009407 GO-bp
Annotation by Michelle Graham. GO Biological Process: toxin catabolic process
SoyBase N/A ISS
GO:0005737 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm
SoyBase N/A ISS
GO:0004364 GO-mf
Annotation by Michelle Graham. GO Molecular Function: glutathione transferase activity
SoyBase N/A ISS
KOG0867
KOG
Glutathione S-transferase
JGI ISS
PTHR11260 Panther
GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING
JGI ISS
PTHR11260:SF55 Panther
SUBFAMILY NOT NAMED
JGI ISS
PF00043 PFAM
Glutathione S-transferase, C-terminal domain
JGI ISS
PF02798 PFAM
Glutathione S-transferase, N-terminal domain
JGI ISS
UniRef100_D2X9U0 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Phi class glutathione transferase GSTF3 n=2 Tax=Populus trichocarpa RepID=D2X9U0_POPTR
SoyBase E_val: 7.00E-113 ISS
UniRef100_I1L7W8 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1L7W8_SOYBN
SoyBase E_val: 4.00E-160 ISS
Expression Patterns of Glyma10g02460
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma10g02460
Paralog Evidence Comments
Glyma02g17330 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma10g02460 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.10g019900 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma10g02460
Coding sequences of Glyma10g02460
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma10g02460.1 sequence type=CDS gene model=Glyma10g02460 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGTGTTTAAGCTTTATGGTCTACCAATGTCCACAAACACTACACGTGCCATGATCTGTCTCCATGAGAAAGAGGTCGATTTTGAACTTGTTCCGGTCAATGTGTTCGCTGCTGAGCACAAGCAGCCTCCTTTTCTCTCCAAGAATCCCTTTGGTTTCATTCCAGTACTGGAAGATGGTGATCTCACTCTTTTTGAGTCCAGGGCCATTACCGCATACGTGGCTGAAAAATTCAAGGAAACAGAACCCGATCTGATAAGGCACAAGGATGCAAAAGAAGCAGCACTGGTGAAGGTATGGACAGAGGTAGAGTCTCATTACTACGAGCCAGCAGTGTCGCCCATTATCTACGAGTACTTCGTGGCCCCTTTCCAAGGCAAAGAACCCGACAAGTCAGTGATTGACACCAACGTTGAGAAGCTGAAGACGGTGCTTGATGTGTACGAGGCCAAGCTGAGCAGCACCAAGTACCTTGCTGGGGACTTTTATAGCCTTGCTGATCTTAGCCATGTTTCTGAAACTCACTACTTGATGCAGACCCCTTGTGCTTCCATGATCAATGAGCTTCCTCATGTAAAGGCTTGGTGGGAGGATATCTCTTCTAGGCCTGCTTTCAATAAGGTTGTGGGAGGAATGAGTTTTGGTCAGAATCATTGA
Predicted protein sequences of Glyma10g02460
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma10g02460.1 sequence type=predicted peptide gene model=Glyma10g02460 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MVFKLYGLPMSTNTTRAMICLHEKEVDFELVPVNVFAAEHKQPPFLSKNPFGFIPVLEDGDLTLFESRAITAYVAEKFKETEPDLIRHKDAKEAALVKVWTEVESHYYEPAVSPIIYEYFVAPFQGKEPDKSVIDTNVEKLKTVLDVYEAKLSSTKYLAGDFYSLADLSHVSETHYLMQTPCASMINELPHVKAWWEDISSRPAFNKVVGGMSFGQNH*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
