Glyma10g02440 - SoyBase

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Report for Sequence Feature Glyma10g02440

Feature Type:	gene_model
Chromosome:	Gm10
Start:	1707855
stop:	1712188
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma10g02440

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G47750	AT	Annotation by Michelle Graham. TAIR10: putative indole-3-acetic acid-amido synthetase GH3.9 \| chr2:19560307-19562974 REVERSE LENGTH=585	SoyBase	E_val: 0	ISS
GO:0009733	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to auxin stimulus	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0009941	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PF03321	PFAM	GH3 auxin-responsive promoter	JGI		ISS
UniRef100_B9GRX0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: GH3 family protein n=1 Tax=Populus trichocarpa RepID=B9GRX0_POPTR	SoyBase	E_val: 0	ISS
UniRef100_UPI000189D6A9	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000189D6A9 related cluster n=1 Tax=unknown RepID=UPI000189D6A9	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma10g02440

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma10g02440

Paralog	Evidence	Comments
Glyma02g17360	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma10g02440 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.10g019700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma10g02440

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma10g02440

Limit To All Plant Sequences

>Glyma10g02440.1   sequence type=CDS   gene model=Glyma10g02440   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATGGAAAGAAATTAGAGTACAAAGGTGAGGAAGCACTAAAGGAGATAGAGAGGCTGACAATGAAGGCTGCTGAAGTTCAAGAAGGCCTTTTGAAACAGATCTTAACTCAGAACAGGGAAACTGAGTATTTGAGTAAGTATATGAGGGGAGAAAAAAATATAACAGACGTAGCAGAGTTTAAGAGGTGTGTTCCAGTAATCACTTATGAAAGAATCTTCCCTTATATCCAGAGGATTGCAAATGGGGAAGACTCTACTCTCATCACCAGTCACCCAATAACAGAAATGTTATGCAGTTCAGGGACATCAGCTGGAGAGCCTAAAATGATGCCATCGATTGTGGAAGATCTAGAACGCCGTACCTTTGTGTACAATCTTATCACGCCAATCATAAATCAGTACGTTTCTGATCTTGACGAGGGCAAGGCAATGTATCTGTACTTTGTAAAAGCAGAAATGTGCACTCCATGTGGCCTACCAGCCAGAACAGTGTTAACAAGCTACTACAAGAGCAAGCACTTCAAGTGCCGCACACACGATCCTTGGAACGACTACACAAGCCCTGACCAAACCATTCTATGCAATGACAGCAACCAAAGCATGCATTGCCAGCTTCTCTCAGGTTTGGTCCACCGCCGCCACGTCCTACGCCTCGGTGCCGTCTTCGCCTCCGCACTTCTGAGAGCCATTTCCTTCCTGGAACGAAACTGGAGGCACCTTTGTGAGGACATTCGAACTGGCCAACTCAGTTCCTTCATAACAGACCCTTCATGCCGTTCATGCATGTCCACATTGCTTTCATCCCCTGACCCTCGTCTCGCTGATGAAATCACGAGAATCTGTAGCCAGAAGTCTTGGAAGGGAATTCTGTGCCAGCTTTGGCCTAAGGCAAAGTTCATTGAGGCTGTGGTTACTGGCTCCATGGCTCAGTATGTTCCTGCTCTTAAGCACTACAGTGATGGGAAATTGCCTTTGGTTTGTACCATGTATGCTTCTTCTGAGTGCTACTTTGGGGTTAATCTGAAGCCTCTTTGTGATCCTGGTGATGTTGCTTTTACGCTCTTGCCTAACATGGGTTACTTTGAGTTCCTTCCTCTTGGACATAACGGGACGCTGTTGATGGACTTTGATGAAGGGGAGCAGGTTCCCAATGATAAGCTTGTGGATTTGGTGCATGTTAAGCTTGGTTGCTTTTATGAGCCTGTGGTCACTACTTTTGCTGGGCTGTATCGATACCGCGTTGGTGACGTGCTTCAGGTGGTAGGATTTTACAACAACGCCCCACAAGTCCGTTTCATCTGCAGGAGAAACGTTGTGATCAGCGTCGACACCGAGAAGACCAACGAGGAGGACTTGCACAGGGGCGTGACAATGGCAAAAAAGTTGCTGGAGCCCTACGATGCTCTCTTAGTGGAGTACACAAGCTACCCCGACACTTCTTCGATACCAGGACACTACGTATTGTACTGGGAAATTCTTCATTGCGGGATAAAGACGACAGAGTCATCACAACAACTTCAACTTCTTGACGCAAACGTGCTTGAGGAATGTTGCATTGCGGTGGAGGAACAATTGGACTACGTATATAGACGATGCCGTAGCTATGACAAGTCTGTGGGGCCACTTGAGATACGTGTGGTGGAGCCAGGGACGTTTGATGCATTGATGGACTTGTTTATTAGCCAAGGTGCTTCCATCAATCAGTACAAGACTCCAAGGTGCATCAAGTCTAAGAAAGCACTCAAGTTACTCAAGTCTAAAGTTACAGCGTCTTTCTTCAGCCCTAGGGATCCCAAATGGTCCCCTAAGATGTGTTCAACTTGA

Predicted protein sequences of Glyma10g02440

Limit To All Plant Sequences

>Glyma10g02440.1   sequence type=predicted peptide   gene model=Glyma10g02440   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDGKKLEYKGEEALKEIERLTMKAAEVQEGLLKQILTQNRETEYLSKYMRGEKNITDVAEFKRCVPVITYERIFPYIQRIANGEDSTLITSHPITEMLCSSGTSAGEPKMMPSIVEDLERRTFVYNLITPIINQYVSDLDEGKAMYLYFVKAEMCTPCGLPARTVLTSYYKSKHFKCRTHDPWNDYTSPDQTILCNDSNQSMHCQLLSGLVHRRHVLRLGAVFASALLRAISFLERNWRHLCEDIRTGQLSSFITDPSCRSCMSTLLSSPDPRLADEITRICSQKSWKGILCQLWPKAKFIEAVVTGSMAQYVPALKHYSDGKLPLVCTMYASSECYFGVNLKPLCDPGDVAFTLLPNMGYFEFLPLGHNGTLLMDFDEGEQVPNDKLVDLVHVKLGCFYEPVVTTFAGLYRYRVGDVLQVVGFYNNAPQVRFICRRNVVISVDTEKTNEEDLHRGVTMAKKLLEPYDALLVEYTSYPDTSSIPGHYVLYWEILHCGIKTTESSQQLQLLDANVLEECCIAVEEQLDYVYRRCRSYDKSVGPLEIRVVEPGTFDALMDLFISQGASINQYKTPRCIKSKKALKLLKSKVTASFFSPRDPKWSPKMCST*

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