Glyma10g02400 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma10g02400

Feature Type:	gene_model
Chromosome:	Gm10
Start:	1660700
stop:	1672927
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma10g02400

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G02480	AT	Annotation by Michelle Graham. TAIR10: AAA-type ATPase family protein \| chr4:1082082-1088680 REVERSE LENGTH=1265	SoyBase	E_val: 0	ISS
GO:0006487	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein N-linked glycosylation	SoyBase	N/A	ISS
GO:0009630	GO-bp	Annotation by Michelle Graham. GO Biological Process: gravitropism	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0000166	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleotide binding	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
GO:0016887	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATPase activity	SoyBase	N/A	ISS
GO:0017111	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleoside-triphosphatase activity	SoyBase	N/A	ISS
KOG0737	KOG	AAA+-type ATPase	JGI		ISS
PTHR23074	Panther	AAA ATPASE	JGI		ISS
PTHR23074:SF20	Panther	AAA-FAMILY ATPASE	JGI		ISS
PF00004	PFAM	ATPase family associated with various cellular activities (AAA)	JGI		ISS
UniRef100_G7IF88	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Katanin p60 ATPase-containing subunit A-like protein n=1 Tax=Medicago truncatula RepID=G7IF88_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1L7W4	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1L7W4_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma10g02400

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma10g02400

Paralog	Evidence	Comments
Glyma02g17410	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma10g02400 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.10g019300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma10g02400

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma10g02400

Limit To All Plant Sequences

>Glyma10g02400.1   sequence type=CDS   gene model=Glyma10g02400   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTCGAAACCAGACGCAGCAGCTCCTCCTCTTCCAAGCGCTCTCTCTCTTCGCCCTCTCCCCCCAACAACACCAAACGGTGCAAGGTGTCCGAGGATTCCTCATCCACCACCGTGCCTTCGGTTGCTCCGGTCAACGAATCTGGAACCGCTAATGAATCCGCGGAACCGGAGCTGATGCTCTCTGATCTGCCTGAAACGGCGTCGTTGAAGGCCGTCGATGGCTGTGTTGCGATGTCGCCCGATAAGTCTCCCTCTGTGCCCGTTGAAGGTGAGGCCTTGGTGTCCCCTCAGTGTCAAGGTGAGACCGCGGAGAAATCGAAGGGGGTGCTGATGGCGGCGGCGACGACGACGGGTGGTCGATCGAAGAAACAACGCCCTTCGAAATTGAGCCCCAAGGTTGCGTGGGGAAAGCTTCTCTCTCAGTGTTCTCAGAATCCTCACGTGTCCATGAGTGATCTTATCTTCACTGTTGGTCAAGGTCGTAATTGTAATTTATGGCTTAAAGATCCCACTGTTGGTAATGTTTTGTGCAAGTTGAGCCACATAGAGCGTGGAGGCTCATCTGTTGCATTACTTGAAATCACAGGGGGCAAAGGTTCTATTCAAGTTAATGGCAAGACATATCGAAAGAATGCCCGTCTGATTTTAAGTGGAGGTGATGAGGTGGTCTTTGGTTCTTCTGGCAAGCATGCTTATATCTTTCAGCTGCTCACAAATAATAATATTAGTCCTGCTGTTATACCTTCTTCTGTGAGCATTTTAGAAGCCCAGAGTGCTCCAATAAATGGAACGCAAGTTGAAGCTAGATCTGGTGATCCTTCTGCTGTTGCTGGAGCATCGATATTGGCCTCCTTATCTAATCTTCCTAAAGATTTATCTCTCCTTTCACCTCCTGCTAAAACTGGAAAGAATGTGCAACAGAACTCTGACATTTCATCACTACCTTCTGGCAACGAGGATGATATGCCAATCAGTGAAATGAAGGATGCCACCAATGATGTAGCATCTGAAGTTTGCTCTGCTGACAAAACTGTTAATGAAAATCCTAGTCTTGACACAGCAGAAGTCGACATCAATGTGGATGCCGATGTTAGGAAGGTTACTGCTGCTACATATGAATTGAGGCCATTACTGCGCTTGCTTGCTGGTTCATGTCCTGAACTTGATTTAAGTTGTGGCATTACCAAGATATTGGAGGAGCGAAGGGAATTAAGAGAGCTCCTTAAAGATGTTGATACCCCAACAATATTGGCATCAACCAGGCGACAAGCATTTAGGGACAGTTTAGAACAGAGAATTCTCAAATCTAAGAATATTGATGTCTCTTTTGAAACTTTCCCATATTATCTAAGTGATACAACAAAGAGCGTTTTGATTGCTTCTACATTTATTCATTTGAAGTGCATGGGCTTTGGAAAATATGCTTCTGACCTCTCATCAGTGTCTCCACGAATATTGTTATCTGGTCCTGCAGGTTCGGAAATATATCAGGAGACTTTGTGCAAGGCACTTGCGAAGCATTTTGGTGCCAGGCTACTGATTGTCGATTCTCTCTCATTGCCTGGCGGAGCACCATCAAAGGAAGTTGATTCTGCCAAAGAAAGTTCCAGACCTGAAAAACCATCATCTGTGTTTACTAAGAGAAGTTCCCAGACTGCCACATTACAACATAAGAAACCAGCTTCTAGTGTTGATGCTGAAATTGTAGGTGGATCAACGATAAGTTCTCAGGCTATGCTGAAGCAAGAGGTTTCTACTGCATCGTCAAAGGGCACTACTCTTAAAGAGGGTGATCGAGTAAAATTTGTTGGTAACTTTCCTTCTGCCGTCTCATCACTGCCAAATTATCCTTCAAGGGGACCTAGCTATGGCTCCCGAGGCAAAGTTCTGCTTGCTTTTGAAGATAATAGGTCTTCAAAAATTGGGGTTAGGTTTGATAAATCAATTCCAGATGGCAATGATCTTGGAGGCCTTTGTGAGGAGGACCGTGGGTTCTTTTGTTCTGCAAATCATTTACTACGGGTAGATGGTTCTGGAGGGGATGACGCGGACAAAGTTGCAATCAGTGATATCTTTGAGGTTACCTCCAATCAGAGTAAAAGTGGTCCACTGGTGTTGTTCATTAAAGATATAGAGAAGGCAATGGTTGGGAACTATGAAGTTTTGAAAAATAAATTTGAAAGCTTGCCACCAAATGTTGTGGTAATTGGCTCTCATACTCTGCTTGACAATCGGAAGGAGAAGACCCAACCTGGTGGCCTTCTGTTTACCAAGTTTGGGAGCAATCAGACAGCACTACTTGATCTTGCTTTTCCGGATAACTTTGGTAGACTGCATGATCGGAGCAAAGAAACCCCTAAAGTAATGAAGCAACTTGGTCGTCTTTTCCCAAACAAAGTGACAATACAGCTGCCTCAGGACGAGGCTATACTTTCTGATTGGAAGCAACAATTAGAACGTGATATTGAAACTATGAAAGCTCAGTCCAATATTGTCAGCATTCGCACAGTTCTCAACAGGATTGGATTGGATTGCCCTGACCTTGAGACTCTTAGCATCAAAGACCAAACCCTAACAACTGAAAGTGTGGAGAAGATCATTGGCTGGGCTATAAGTTACCATTTTATGCATTCATCTAAAGCTTCTATCAAAGATTCCAAGCTTGTGATATCTGCAGAAAGCCTTAATTATGGAATTAACATTCTACAGGGCATTCAAAATGAGAACAAAAACTTGAAAAAATCACTGAAGGATGTGGTTACTGAGAATGAATTTGAGAAAAAACTTCTTGCTGATGTTATTCCACCAACTGATATTGGGGTCACATTTGATGATATTGGAGCTTTAGAAAATGTGAAGGACACCTTGAAGGAATTGGTTATGCTTCCTCTACAGAGGCCTGAATTGTTTTGCAAAGGACAGCTGGCTAAGCCTTGCAAGGGAATATTGCTTTTTGGGCCCCCTGGCACAGGAAAAACAATGCTTGCAAAGGCTGTAGCAACTGAAGCTGGAGCAAATTTCATTAACATTTCAATGTCCAGCATTACTTCAAAGTGGTTTGGTGAAGGAGAGAAGTATGTCAAAGCTGTCTTTTCTCTAGCCAGCAAAATTGCTCCAAGTGTTATTTTTGTTGACGAGGTTGATAGTATGCTAGGGAGACGTGAAAACCCTAGTGAGCATGAGGCTATGCGAAAAATGAAAAATGAGTTTATGGTAAATTGGGATGGTCTGCGTACAAAAGATAAAGAGCGTGTACTTGTTCTTGCTGCTACAAACAGGCCTTTTGATCTTGATGAGGCTGTTATTAGGAGGCTTCCTCGACGATTGATGGTTAATTTGCCAGATGCTCCAAACAGAGAAAAAATTCTCAGAGTCATTTTAGTGAAAGAAGATTTGGCACCTGACGTTGATTTTGAAGCAATAGCTAATATGACTGATGGATATTCTGGGAGTGACCTAAAGAATCTGTGTGTCACAGCAGCTCACTGTCCAATACGAGAGATCTTGGAGAAGGAAAAGAAGGAGAGAAGCTTAGCTTTGTCTGAGAGCAAACCTTTACCTGGATTGTGTGGCAGTGGTGACATTCGTCCCTTAAAGATGGATGATTTTAGATATGCACATGAGCAGGTGTGTGCAAGCGTGTCATCAGAGTCAACAAATATGAATGAGCTACTCCAATGGAATGACCTCTATGGAGAAGGAGGATCAAGAAAAATGAGATCTCTGAGCTATTTCATGTAA

Predicted protein sequences of Glyma10g02400

Limit To All Plant Sequences

>Glyma10g02400.1   sequence type=predicted peptide   gene model=Glyma10g02400   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVETRRSSSSSSKRSLSSPSPPNNTKRCKVSEDSSSTTVPSVAPVNESGTANESAEPELMLSDLPETASLKAVDGCVAMSPDKSPSVPVEGEALVSPQCQGETAEKSKGVLMAAATTTGGRSKKQRPSKLSPKVAWGKLLSQCSQNPHVSMSDLIFTVGQGRNCNLWLKDPTVGNVLCKLSHIERGGSSVALLEITGGKGSIQVNGKTYRKNARLILSGGDEVVFGSSGKHAYIFQLLTNNNISPAVIPSSVSILEAQSAPINGTQVEARSGDPSAVAGASILASLSNLPKDLSLLSPPAKTGKNVQQNSDISSLPSGNEDDMPISEMKDATNDVASEVCSADKTVNENPSLDTAEVDINVDADVRKVTAATYELRPLLRLLAGSCPELDLSCGITKILEERRELRELLKDVDTPTILASTRRQAFRDSLEQRILKSKNIDVSFETFPYYLSDTTKSVLIASTFIHLKCMGFGKYASDLSSVSPRILLSGPAGSEIYQETLCKALAKHFGARLLIVDSLSLPGGAPSKEVDSAKESSRPEKPSSVFTKRSSQTATLQHKKPASSVDAEIVGGSTISSQAMLKQEVSTASSKGTTLKEGDRVKFVGNFPSAVSSLPNYPSRGPSYGSRGKVLLAFEDNRSSKIGVRFDKSIPDGNDLGGLCEEDRGFFCSANHLLRVDGSGGDDADKVAISDIFEVTSNQSKSGPLVLFIKDIEKAMVGNYEVLKNKFESLPPNVVVIGSHTLLDNRKEKTQPGGLLFTKFGSNQTALLDLAFPDNFGRLHDRSKETPKVMKQLGRLFPNKVTIQLPQDEAILSDWKQQLERDIETMKAQSNIVSIRTVLNRIGLDCPDLETLSIKDQTLTTESVEKIIGWAISYHFMHSSKASIKDSKLVISAESLNYGINILQGIQNENKNLKKSLKDVVTENEFEKKLLADVIPPTDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLAKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPSEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNREKILRVILVKEDLAPDVDFEAIANMTDGYSGSDLKNLCVTAAHCPIREILEKEKKERSLALSESKPLPGLCGSGDIRPLKMDDFRYAHEQVCASVSSESTNMNELLQWNDLYGEGGSRKMRSLSYFM*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain