Report for Sequence Feature Glyma10g02360
Feature Type: gene_model
Chromosome: Gm10
Start: 1627670
stop: 1628920
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma10g02360
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT1G02870 AT
Annotation by Michelle Graham. TAIR10: FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosome biogenesis protein Nop16 (InterPro:IPR019002); Has 104 Blast hits to 104 proteins in 57 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 63; Plants - 35; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink). | chr1:637401-638603 REVERSE LENGTH=193
SoyBase E_val: 1.00E-65 ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0003674 GO-mf
Annotation by Michelle Graham. GO Molecular Function: molecular function
SoyBase N/A ISS
KOG4771
KOG
Nucleolar protein (NOP16) involved in 60S ribosomal subunit biogenesis
JGI ISS
PF09420 PFAM
Ribosome biogenesis protein Nop16
JGI ISS
UniRef100_I1L7V9 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1L7V9_SOYBN
SoyBase E_val: 2.00E-118 ISS
UniRef100_Q9SRY0 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: F22D16.13 protein n=1 Tax=Arabidopsis thaliana RepID=Q9SRY0_ARATH
SoyBase E_val: 3.00E-22 ISS
Expression Patterns of Glyma10g02360
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma10g02360
Paralog Evidence Comments
Glyma02g17440 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma10g02360 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.10g018900 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma10g02360
Transcripts of Glyma10g02360
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma10g02360.2 sequence type=transcript gene model=Glyma10g02360 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
AATGTGAAGGGCACCATGGTAATCGCACAGTAGAAGCCCGAGAAACGACGTCGCTGAAGCTGTGCTGAAATAACGAGACATTTTGTGCCCTAACCTAGAGAAAACCTAAAAGCCTCGTTGGCGGTAGCGGCAGTGACAGGAGAATGGGAAGGTCGAGAAGAAAGTACAAGCAATCGAGAACCAAGGTCCGTGTGGGACTCCCTAAGAAGAACCCTAGGCTTTTCAAACCCTCTTTCTCCGTTCCACCCAAGCTCTTGCAATCCCTCGACCAAGAGCCTCAATGGGACGACCAAGGCACCGTTAACACCAACTACTCCTCCTTTGGCGTTCTCTCTGACCCTAACTCCCTCACCGAACTCTCTTCCGATCCTCAAACCATCGATTCCGGCAGCGATCTCGAAGAAGACGACTTGAAATCTGCCCTAGGAAAGAAGCGAAGGGATGGGAGGAGCGCGCCGCCTCAGCCTCTGACTGCAATGCAACGGATTCATATCAGTCGTCTCGTCGCTAAATACGGAGATGATTATCAGGTTTGATATTTTCGATATTTTTTTCTTTTTCTTTTTTCGTTTGGGGTTTTTAAAGGTTTTTTGTTATTGTTGTTGTTTTTGTTTTGCAGAGTATGTTGGTGGATATAAAGCTGAATCCGATGCAGCATTCAATTGGAACTCTGCAGAAGCTGTGCATGAGGTATCATATGTATCAAAATAAGAACCCGCTCCTTAAGGCCAAATGAAATGGGAGCTTAATTAATTAATCCATGGATGGAGATGCAATGATTGGAGTGGATCGTTTAGCCAAAATTTTTGTCACAGTGAGGACGTGTTTCTCTACCATGTCATCGTTGAGAAATTTTGTTAATGCTTTTGAATTTTTGAATTATTTGTGGATTTTTGTTGTGATAGATTAGGCATTCTGGACCTCTGCTCTTCCAGTCTTCCTAACCTGCTACCACCAAGATTATGTAGCATTTTATTATAGAATTAGATTTTCAATCATGAAATAGAGTTACATACATGCACTTTTGGAGTTTTCACACTCTTAAGAAATCATCTTTGTTAGATTAGGATTTTTTAAGTAATTATTATAAAATTATACGTTTGGTTTTTACACTCTTATTTTTTCTATACAAG
Coding sequences of Glyma10g02360
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma10g02360.1 sequence type=CDS gene model=Glyma10g02360 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGGAAGGTCGAGAAGAAAGTACAAGCAATCGAGAACCAAGGTCCGTGTGGGACTCCCTAAGAAGAACCCTAGGCTTTTCAAACCCTCTTTCTCCGTTCCACCCAAGCTCTTGCAATCCCTCGACCAAGAGCCTCAATGGGACGACCAAGGCACCGTTAACACCAACTACTCCTCCTTTGGCGTTCTCTCTGACCCTAACTCCCTCACCGAACTCTCTTCCGATCCTCAAACCATCGATTCCGGCAGCGATCTCGAAGAAGACGACTTGAAATCTGCCCTAGGAAAGAAGCGAAGGGATGGGAGGAGCGCGCCGCCTCAGCCTCTGACTGCAATGCAACGGATTCATATCAGTCGTCTCGTCGCTAAATACGGAGATGATTATCAGAGTATGTTGGTGGATATAAAGCTGAATCCGATGCAGCATTCAATTGGAACTCTGCAGAAGCTGTGCATGAGGTATCATATGTATCAAAATAAGAACCCGCTCCTTAAGGCCAAATGA
>Glyma10g02360.2 sequence type=CDS gene model=Glyma10g02360 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGGAAGGTCGAGAAGAAAGTACAAGCAATCGAGAACCAAGGTCCGTGTGGGACTCCCTAAGAAGAACCCTAGGCTTTTCAAACCCTCTTTCTCCGTTCCACCCAAGCTCTTGCAATCCCTCGACCAAGAGCCTCAATGGGACGACCAAGGCACCGTTAACACCAACTACTCCTCCTTTGGCGTTCTCTCTGACCCTAACTCCCTCACCGAACTCTCTTCCGATCCTCAAACCATCGATTCCGGCAGCGATCTCGAAGAAGACGACTTGAAATCTGCCCTAGGAAAGAAGCGAAGGGATGGGAGGAGCGCGCCGCCTCAGCCTCTGACTGCAATGCAACGGATTCATATCAGTCGTCTCGTCGCTAAATACGGAGATGATTATCAGGTTTGA
Predicted protein sequences of Glyma10g02360
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma10g02360.1 sequence type=predicted peptide gene model=Glyma10g02360 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MGRSRRKYKQSRTKVRVGLPKKNPRLFKPSFSVPPKLLQSLDQEPQWDDQGTVNTNYSSFGVLSDPNSLTELSSDPQTIDSGSDLEEDDLKSALGKKRRDGRSAPPQPLTAMQRIHISRLVAKYGDDYQSMLVDIKLNPMQHSIGTLQKLCMRYHMYQNKNPLLKAK*
>Glyma10g02360.2 sequence type=predicted peptide gene model=Glyma10g02360 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MGRSRRKYKQSRTKVRVGLPKKNPRLFKPSFSVPPKLLQSLDQEPQWDDQGTVNTNYSSFGVLSDPNSLTELSSDPQTIDSGSDLEEDDLKSALGKKRRDGRSAPPQPLTAMQRIHISRLVAKYGDDYQV*