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Report for Sequence Feature Glyma10g02350

Feature Type:gene_model
Chromosome:Gm10
Start:1622932
stop:1626750
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma10g02350
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G02860AT Annotation by Michelle Graham. TAIR10: SPX (SYG1/Pho81/XPR1) domain-containing protein | chr1:635474-637083 FORWARD LENGTH=335 SoyBaseE_val: 1.00E-152ISS
GO:0006817GO-bp Annotation by Michelle Graham. GO Biological Process: phosphate ion transport SoyBaseN/AISS
GO:0009626GO-bp Annotation by Michelle Graham. GO Biological Process: plant-type hypersensitive response SoyBaseN/AISS
GO:0009627GO-bp Annotation by Michelle Graham. GO Biological Process: systemic acquired resistance SoyBaseN/AISS
GO:0009697GO-bp Annotation by Michelle Graham. GO Biological Process: salicylic acid biosynthetic process SoyBaseN/AISS
GO:0009751GO-bp Annotation by Michelle Graham. GO Biological Process: response to salicylic acid stimulus SoyBaseN/AISS
GO:0010167GO-bp Annotation by Michelle Graham. GO Biological Process: response to nitrate SoyBaseN/AISS
GO:0010337GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of salicylic acid metabolic process SoyBaseN/AISS
GO:0016036GO-bp Annotation by Michelle Graham. GO Biological Process: cellular response to phosphate starvation SoyBaseN/AISS
GO:0042742GO-bp Annotation by Michelle Graham. GO Biological Process: defense response to bacterium SoyBaseN/AISS
GO:0080021GO-bp Annotation by Michelle Graham. GO Biological Process: response to benzoic acid stimulus SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0004842GO-mf Annotation by Michelle Graham. GO Molecular Function: ubiquitin-protein ligase activity SoyBaseN/AISS
GO:0008270GO-mf Annotation by Michelle Graham. GO Molecular Function: zinc ion binding SoyBaseN/AISS
PTHR23041Panther RING FINGER PROTEIN 4 JGI ISS
PTHR23041:SF6Panther PUTATIVE RING FINGER PROTEIN JGI ISS
PF03105PFAM SPX domain JGI ISS
UniRef100_G7IF76UniRef Annotation by Michelle Graham. Most informative UniRef hit: E3 ubiquitin-protein ligase BAH1 n=1 Tax=Medicago truncatula RepID=G7IF76_MEDTR SoyBaseE_val: 0ISS
UniRef100_I1L7V8UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1L7V8_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma10g02350
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma10g02350 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.10g018800 Wm82.a2.v1IGC As supplied by JGI

References for Glyma10g02350
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma10g02350
>Glyma10g02350.1   sequence type=CDS   gene model=Glyma10g02350   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAGTTCTGCAAGACCTACCAGCAGTACATGCAAGGACATGGCCACAACAAGCTCCCTTCTGTTGGCTTCAAGAACCTCAAAAAGATCATTAAAAGCTGCAGGAGAGCCTCCACTCAACCTACCTGCCCTGATCATTGCCCAGTGTGCGATGGGACCTTTTTCCCTTCCCTTCTCAATGAAATGTCAGATATAGTAGGGTGCTTTAATCAGCGCGCGCAGCAATTGCTGGAACTACATCTTGCTTCTGGCTTCAGAAAGTACTTTCTCATGTTGAAAGGAAAATTACACAAGAATCATACTGCTCTAATCGAAGAAGGAAAAGATCTAGTCATATATGCACTCATAAATTCCATCGCAATTCGAAAAATCTTGAAGAAATATGATAAGATTCATTATTCCAAGCAAGGCCAATTATTCAAGTCGAAAGTCCAGACCATGCACAAGGAAATTCTTCAAAGTCCCTGGCTTTGTGAGCTTATTGCCTTACACATTAACTTAAGGGAAACAAAATCCAAGCCAAGGGAGGCATCCGCACTGTTTGATGGATGTTATCTCACATTCACGGATGGAAAACCATCACTTACTTGTGAGCTCTTTGATTCCGTCAAAATTGATATTGACTTGACCTGCTCTATATGCTTGGATACAGTGTTTGATTCAGTTTCTCTGACATGCGGCCACATATTCTGCTACACCTGTGCTTGCTCAACTGCATCAGTTACCATTGTCGATGGACTTAAGGCAGCAAATCCTAAAGAAAAATGTCCTCTATGCCGAGAGGGAAGAGTTTACGAAGATGCTGTGCATTTGGAAGAATTAAATATTCTGCTAGGCCGAAGCTGCAGGGAGTACTGGGAGCAAAGGCTTCAGATGGAGAGGGTAGAGAGGGTTAAGCAAGTTAAGGAGCACTGGGAAACGCAGTGTAGGGCGTTCATGGGCATCTAA
Predicted protein sequences of Glyma10g02350
>Glyma10g02350.1   sequence type=predicted peptide   gene model=Glyma10g02350   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKFCKTYQQYMQGHGHNKLPSVGFKNLKKIIKSCRRASTQPTCPDHCPVCDGTFFPSLLNEMSDIVGCFNQRAQQLLELHLASGFRKYFLMLKGKLHKNHTALIEEGKDLVIYALINSIAIRKILKKYDKIHYSKQGQLFKSKVQTMHKEILQSPWLCELIALHINLRETKSKPREASALFDGCYLTFTDGKPSLTCELFDSVKIDIDLTCSICLDTVFDSVSLTCGHIFCYTCACSTASVTIVDGLKAANPKEKCPLCREGRVYEDAVHLEELNILLGRSCREYWEQRLQMERVERVKQVKEHWETQCRAFMGI*






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