Glyma10g02340 - SoyBase

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Report for Sequence Feature Glyma10g02340

Feature Type:	gene_model
Chromosome:	Gm10
Start:	1617632
stop:	1621020
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma10g02340

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G47710	AT	Annotation by Michelle Graham. TAIR10: Adenine nucleotide alpha hydrolases-like superfamily protein \| chr2:19555045-19555956 REVERSE LENGTH=162	SoyBase	E_val: 3.00E-69	ISS
GO:0002238	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to molecule of fungal origin	SoyBase	N/A	ISS
GO:0005773	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: vacuole	SoyBase	N/A	ISS
GO:0005794	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PF00582	PFAM	Universal stress protein family	JGI		ISS
UniRef100_B4UW73	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Universal stress protein n=1 Tax=Arachis hypogaea RepID=B4UW73_ARAHY	SoyBase	E_val: 1.00E-89	ISS
UniRef100_I1L7V6	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1L7V6_SOYBN	SoyBase	E_val: 9.00E-116	ISS

Expression Patterns of Glyma10g02340

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma10g02340

Paralog	Evidence	Comments
Glyma02g17470	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma10g02340 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.10g018700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma10g02340

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma10g02340

Limit To All Plant Sequences

>Glyma10g02340.2   sequence type=transcript   gene model=Glyma10g02340   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATTTAATTCTCTAATCTTATCTTAGGGAACATATTCATTGTGCTTCAAATTGGCTAAGAAAATAAAATTAAAAATAATTAATAAAGTATTAAATTCTGCCCTCTTTCGTATCCTACACTATCCGCAAAGGGCGAGAATCCGCGACGTCGTTTTCAAACACGGCTTCCATAGTGAAGGACTGATTCAATAATTGACGAGTGGTTTGTTTGGTTTGATAGGCATAGACGACAACCAAGTACAGAGAAGTAAAGAGAGTTTTGCTTTTTGAAATGGCAGCGTCGTCGTCGTCGTCGGAGAAGCAAGTGGTGCTGATAGGCATAGACGACAGCGAGCAGAGCACGTACGCGCTGAATTGGGCTTTGGATCACTTCTTCCCGAGCCCAATCTTCAAGCTCGTTCTCATCCACTCAAGGCCCACCGCCACCTCCGCCGTGGGCTTCGCCGGCCCTGGAGCCGCTGAGATCTTGCCTATTGTAGATTCCGATTTGAGAAAGATTGCCGCCAGAGTCCTCGAAACCGCCAAACAACTTTGCTTCAACAAATCCGTGAATGATGTGACAGCGGAAGTGGTGGAAGGTGATCCTAGAAATGTTCTTTGTGATGCTGTGGATAAGTACCGTGCTGCAATATTGGTTGTGGGCAGCCATGGTTATGGGGCTATAAAAAGGGCGGTTTTAGGTAGTGTCAGTGACTATTGTGCTCATCATGCTCACTGCACTGTGATGATCGTGAAAAAGCCAAAAATCAAACACTGATCTGTAATGGCTGCGTCTATATAGTACAACAATAAACATAACCGGCCCTTTCAGCCAAAGAAAAAAAATAATGTTCACAGAAATTCGTAACTATGCTTGTTGTATGGATATTACATATTGTCCTTATGGTTTGATACGTTGAGGTACAGCTTATTTTTAAAGATGGAAGTATGGAACCATCAAAAAAGTTATTAAATTGATGTGTTTAATTCCATTACTGCTCTTTTGCATTCTAATAATAATAATAATCCAGTGTCTTCTAAAAAAAAGA

Coding sequences of Glyma10g02340

Limit To All Plant Sequences

>Glyma10g02340.1   sequence type=CDS   gene model=Glyma10g02340   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAGCGTCGTCGTCGTCGTCGGAGAAGCAAGTGGTGCTGATAGGCATAGACGACAGCGAGCAGAGCACGTACGCGCTGAATTGGGCTTTGGATCACTTCTTCCCGAGCCCAATCTTCAAGCTCGTTCTCATCCACTCAAGGCCCACCGCCACCTCCGCCGTGGGCTTCGCCGGCCCTGTGTATGCAGGAGCCGCTGAGATCTTGCCTATTGTAGATTCCGATTTGAGAAAGATTGCCGCCAGAGTCCTCGAAACCGCCAAACAACTTTGCTTCAACAAATCCGTGAATGATGTGACAGCGGAAGTGGTGGAAGGTGATCCTAGAAATGTTCTTTGTGATGCTGTGGATAAGTACCGTGCTGCAATATTGGTTGTGGGCAGCCATGGTTATGGGGCTATAAAAAGGGCGGTTTTAGGTAGTGTCAGTGACTATTGTGCTCATCATGCTCACTGCACTGTGATGATCGTGAAAAAGCCAAAAATCAAACACTGA

>Glyma10g02340.2   sequence type=CDS   gene model=Glyma10g02340   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAGCGTCGTCGTCGTCGTCGGAGAAGCAAGTGGTGCTGATAGGCATAGACGACAGCGAGCAGAGCACGTACGCGCTGAATTGGGCTTTGGATCACTTCTTCCCGAGCCCAATCTTCAAGCTCGTTCTCATCCACTCAAGGCCCACCGCCACCTCCGCCGTGGGCTTCGCCGGCCCTGGAGCCGCTGAGATCTTGCCTATTGTAGATTCCGATTTGAGAAAGATTGCCGCCAGAGTCCTCGAAACCGCCAAACAACTTTGCTTCAACAAATCCGTGAATGATGTGACAGCGGAAGTGGTGGAAGGTGATCCTAGAAATGTTCTTTGTGATGCTGTGGATAAGTACCGTGCTGCAATATTGGTTGTGGGCAGCCATGGTTATGGGGCTATAAAAAGGGCGGTTTTAGGTAGTGTCAGTGACTATTGTGCTCATCATGCTCACTGCACTGTGATGATCGTGAAAAAGCCAAAAATCAAACACTGA

Predicted protein sequences of Glyma10g02340

Limit To All Plant Sequences

>Glyma10g02340.1   sequence type=predicted peptide   gene model=Glyma10g02340   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAASSSSSEKQVVLIGIDDSEQSTYALNWALDHFFPSPIFKLVLIHSRPTATSAVGFAGPVYAGAAEILPIVDSDLRKIAARVLETAKQLCFNKSVNDVTAEVVEGDPRNVLCDAVDKYRAAILVVGSHGYGAIKRAVLGSVSDYCAHHAHCTVMIVKKPKIKH*

>Glyma10g02340.2   sequence type=predicted peptide   gene model=Glyma10g02340   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAASSSSSEKQVVLIGIDDSEQSTYALNWALDHFFPSPIFKLVLIHSRPTATSAVGFAGPGAAEILPIVDSDLRKIAARVLETAKQLCFNKSVNDVTAEVVEGDPRNVLCDAVDKYRAAILVVGSHGYGAIKRAVLGSVSDYCAHHAHCTVMIVKKPKIKH*

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