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Report for Sequence Feature Glyma10g02330

Feature Type:gene_model
Chromosome:Gm10
Start:1612229
stop:1615256
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma10g02330
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G02425AT Annotation by Michelle Graham. TAIR10: unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; Has 29 Blast hits to 28 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 6; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr4:1067531-1068663 REVERSE LENGTH=262 SoyBaseE_val: 3.00E-63ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
UniRef100_UPI000233CDD6UniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233CDD6 related cluster n=1 Tax=unknown RepID=UPI000233CDD6 SoyBaseE_val: 2.00E-164ISS

Expression Patterns of Glyma10g02330
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma10g02330
ParalogEvidenceComments
Glyma02g02190 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma10g02330 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.10g018600 Wm82.a2.v1IGC As supplied by JGI

References for Glyma10g02330
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma10g02330
>Glyma10g02330.2   sequence type=CDS   gene model=Glyma10g02330   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACTCAATCGATGTCGCACAAGCCTCTGGACTCGCGCCACTCCATAGACTCGTGCTTGTTGCAGCTCCGCAGCTGGAAACCCTTCAAGCTCCAACAAGACGGGCCCCACCCTAAACCCTACTACCACAAACGCCCCTGCCTCTCCGATCGCACAACCACCTCGTTTTCCCTCGACATGTCCAAACTCACCCTCGCCGCCGACGACGACACCATTCACAACCCCAACAACAACCGCGCCACCAATTACCGCCTCGTCGCGCGCAAGAGGCGCCGCCGCGGCTCCCGATCCCTGTCCGGCCGCAGCAGCGACCGGAGCGGGACGCGGCGCTGCTGCTCCGTGGGGGCCTCCGCCGCTTACGGCACCTGCTCCGATTTCCCGGTGGCCATGGGCACCGATTCCAGTGGGGAGCTCTTCGGCAACGGGGATCCGAATTGGTCTTCGGACGTGAGCGAGGCGAAGAATTCGAGGAGGGAGAGAGAGAGGGATGGCGAGAAGGAGAATGTGGGTGTTGGGTTTGGGGTGAGTGGCTGCTCTGATGCAAATGGTAACGAATCTGGGTATGGGAGCGAACCGGGTTATCGCGGGGATGCTGAGTTTGGATATGGGGATGAGTTTGATGAGGAAGAGGATGATCCCAGATTGTTGTTCTGGGGTGACCAACTTGGAGCTGTAGATTCTAAAAGGGAGATGGTTGGAGAGAACACCTTGCTAGATCAAAAATCTCATCATAGATGCCGTCGCAGGAAGCATGATTGTAGAATGGTTGATGCATTAAGGTGA
Predicted protein sequences of Glyma10g02330
>Glyma10g02330.2   sequence type=predicted peptide   gene model=Glyma10g02330   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTQSMSHKPLDSRHSIDSCLLQLRSWKPFKLQQDGPHPKPYYHKRPCLSDRTTTSFSLDMSKLTLAADDDTIHNPNNNRATNYRLVARKRRRRGSRSLSGRSSDRSGTRRCCSVGASAAYGTCSDFPVAMGTDSSGELFGNGDPNWSSDVSEAKNSRRERERDGEKENVGVGFGVSGCSDANGNESGYGSEPGYRGDAEFGYGDEFDEEEDDPRLLFWGDQLGAVDSKREMVGENTLLDQKSHHRCRRRKHDCRMVDALR*






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