Glyma10g02290 - SoyBase

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Report for Sequence Feature Glyma10g02290

Feature Type:	gene_model
Chromosome:	Gm10
Start:	1593584
stop:	1597752
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma10g02290

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G62830	AT	Annotation by Michelle Graham. TAIR10: NAD(P)-binding Rossmann-fold superfamily protein \| chr3:23232539-23235353 FORWARD LENGTH=445	SoyBase	E_val: 0	ISS
GO:0009225	GO-bp	Annotation by Michelle Graham. GO Biological Process: nucleotide-sugar metabolic process	SoyBase	N/A	ISS
GO:0019305	GO-bp	Annotation by Michelle Graham. GO Biological Process: dTDP-rhamnose biosynthetic process	SoyBase	N/A	ISS
GO:0042732	GO-bp	Annotation by Michelle Graham. GO Biological Process: D-xylose metabolic process	SoyBase	N/A	ISS
GO:0044237	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular metabolic process	SoyBase	N/A	ISS
GO:0000139	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: Golgi membrane	SoyBase	N/A	ISS
GO:0005768	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: endosome	SoyBase	N/A	ISS
GO:0005794	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus	SoyBase	N/A	ISS
GO:0005802	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: trans-Golgi network	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0000166	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleotide binding	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
GO:0008460	GO-mf	Annotation by Michelle Graham. GO Molecular Function: dTDP-glucose 4,6-dehydratase activity	SoyBase	N/A	ISS
GO:0048040	GO-mf	Annotation by Michelle Graham. GO Molecular Function: UDP-glucuronate decarboxylase activity	SoyBase	N/A	ISS
GO:0050662	GO-mf	Annotation by Michelle Graham. GO Molecular Function: coenzyme binding	SoyBase	N/A	ISS
KOG1429	KOG	dTDP-glucose 4-6-dehydratase/UDP-glucuronic acid decarboxylase	JGI		ISS
PTHR10366	Panther	NAD DEPENDENT EPIMERASE/DEHYDRATASE	JGI		ISS
PTHR10366:SF35	Panther	gb def: udp-glucose 4-epimerase [bacillus halodurans]	JGI		ISS
PF01370	PFAM	NAD dependent epimerase/dehydratase family	JGI		ISS
UniRef100_G7IF53	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: UDP-glucuronic acid decarboxylase n=1 Tax=Medicago truncatula RepID=G7IF53_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1L7V1	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1L7V1_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma10g02290

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma10g02290

Paralog	Evidence	Comments
Glyma02g02170	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma10g02290 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.10g018400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma10g02290

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma10g02290

Limit To All Plant Sequences

>Glyma10g02290.2   sequence type=transcript   gene model=Glyma10g02290   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GACCCGCATCTCATTCCCGTCCCCGGCGACTGAGTCGCGGTCTCTTCCCAACTCGGAACTCAGTCCATTCCGCATTTCTCTTCAAACCAAATTTCTTCTGAAGAAGGAGATTTGAATTCAGAATTGAGTGAGAAGAAGAGAATAGAAATGGGCTCCGAATTGATTTTCAGAGGCCACGAGGCTCAGCCCGTGGACGACTCGTACTCGCCGAAGCCCCACAAGCCCTGGTTCACCGTGACTCGCCCGATTCACTACATGCTCCGCGAGCAGCGACTCGTCTTCGTCCTCGTCGGCGTCATCATAGCAACCCTCTTCTTCACACTCGTCCCTTCCTCATCCTCTTCAAGCGTTCCGTACGAGTCTCTCCCGATCTCGTACTTCGAGCGCGAGTCAAAGATTCCGGCGTACCACCACCGCGTCGCTGCGGCGGTGCACTCGGTGGGGAAGGTGCCGTTGGGAATTAAGAGGAAGGGGCTCCGGATCGTGGTGACCGGCGGCGCGGGGTTCGTTGGGTCGCACCTGGTGGATCGGTTGATTGCGAGAGGGGACAGCGTGATCGTGGTGGACAATTTCTTCACGGGAAGAAAAGAGAACGTGATGCATCATTTTGGAAACCCTAGATTCGAGCTCATTCGACACGACGTCGTTGAGCCTCTCCTTCTCGAGGTCGATCAGATCTACCATCTGGCTTGCCCTGCTTCCCCTGTCCACTACAAGTTCAATCCCGTCAAGACTATCAAGACCAATGTGGTGGGGACCTTGAACATGCTTGGTCTAGCTAAGCGAGTGGGAGCGAGGTTCTTGTTGACGAGTACCAGTGAGGTTTATGGAGATCCTCTGCAGCACCCTCAGAAGGAGACTTACTGGGGAAACGTCAACCCAATTGGTGTCCGAAGCTGCTACGACGAGGGAAAGCGTACGGCCGAGACGTTGACCATGGACTACCACCGAGGTGCCGGCGTTGAGGTTAGAATTGCTAGAATCTTTAACACCTACGGGCCTAGAATGTGCTTAGATGATGGCCGTGTTGTTAGTAACTTCGTTGCTCAGGCACTAAGGAAGGAGCCTTTGACCGTTTATGGAGATGGGAAACAGACAAGAAGTTTCCAATATGTCTCTGATTTGGTGGAGGGTCTAATCCGCCTTATGGAAGGAGAACACGTGGGACCTTTCAATCTTGGAAATCCCGGAGAATTTACCATGCTTGAACTTGCCAAGGTAAAGTTGGGTTTTTCTTCAAATATAATTTTATAAGAGCGGTAAGGTTGAAACTTTCTTACTTTCAAACTAGTAGGCTAATATCATGCCTGAGCTTAATTCTGAGAAACTGCCCACAAGAAAGTGCAAATTAAGATTAGGAAGGAAAAGAAAATTGCTCATAGTCATGCACTCATGAGCATACTAATAATCCGAAGGGCTCATGTTCATCCGAATAAGTTAATTGAACCTTACTCATACATCATTCTTGGCATGGGATACCTTTTCTTCATTTTTCCCATTCTCAATTTACCTTGTGGCATGAGCATGATTGTTCCCTACATTCTAGATTTGTTTACTCATTTTTTAATCATGTATTGTGGATGGAAATGAACAGTGTTAATTTGGAAGAAAGGGCTGTATTTTTGTCGGTGAACTCTGTATTTTAGTCTCATAGCTGATAGACCCCATTAATTGAATGCATCTATATACTTGCGTTT

Coding sequences of Glyma10g02290

Limit To All Plant Sequences

>Glyma10g02290.1   sequence type=CDS   gene model=Glyma10g02290   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGCTCCGAATTGATTTTCAGAGGCCACGAGGCTCAGCCCGTGGACGACTCGTACTCGCCGAAGCCCCACAAGCCCTGGTTCACCGTGACTCGCCCGATTCACTACATGCTCCGCGAGCAGCGACTCGTCTTCGTCCTCGTCGGCGTCATCATAGCAACCCTCTTCTTCACACTCGTCCCTTCCTCATCCTCTTCAAGCGTTCCGTACGAGTCTCTCCCGATCTCGTACTTCGAGCGCGAGTCAAAGATTCCGGCGTACCACCACCGCGTCGCTGCGGCGGTGCACTCGGTGGGGAAGGTGCCGTTGGGAATTAAGAGGAAGGGGCTCCGGATCGTGGTGACCGGCGGCGCGGGGTTCGTTGGGTCGCACCTGGTGGATCGGTTGATTGCGAGAGGGGACAGCGTGATCGTGGTGGACAATTTCTTCACGGGAAGAAAAGAGAACGTGATGCATCATTTTGGAAACCCTAGATTCGAGCTCATTCGACACGACGTCGTTGAGCCTCTCCTTCTCGAGGTCGATCAGATCTACCATCTGGCTTGCCCTGCTTCCCCTGTCCACTACAAGTTCAATCCCGTCAAGACTATCAAGACCAATGTGGTGGGGACCTTGAACATGCTTGGTCTAGCTAAGCGAGTGGGAGCGAGGTTCTTGTTGACGAGTACCAGTGAGGTTTATGGAGATCCTCTGCAGCACCCTCAGAAGGAGACTTACTGGGGAAACGTCAACCCAATTGGTGTCCGAAGCTGCTACGACGAGGGAAAGCGTACGGCCGAGACGTTGACCATGGACTACCACCGAGGTGCCGGCGTTGAGGTTAGAATTGCTAGAATCTTTAACACCTACGGGCCTAGAATGTGCTTAGATGATGGCCGTGTTGTTAGTAACTTCGTTGCTCAGGCACTAAGGAAGGAGCCTTTGACCGTTTATGGAGATGGGAAACAGACAAGAAGTTTCCAATATGTCTCTGATTTGGTGGAGGGTCTAATCCGCCTTATGGAAGGAGAACACGTGGGACCTTTCAATCTTGGAAATCCCGGAGAATTTACCATGCTTGAACTTGCCAAGGTGGTTCAAGAAACAATAGACCCTGATGCTAGGATAGAGTACAGGCCCAACACAGAGGATGACCCGCACAAGAGAAAGCCTGATATAAGTAGGGCTAAGGATCAACTTGGCTGGGAACCCAAGGTTGACCTGCGCAAGGGCCTCCCACTAATGGTTTCTGACTTCCGGCAACGCATTTTTGGTGACCAGAAGGAAAAGGCATCCGTAGCCTAA

>Glyma10g02290.2   sequence type=CDS   gene model=Glyma10g02290   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGCTCCGAATTGATTTTCAGAGGCCACGAGGCTCAGCCCGTGGACGACTCGTACTCGCCGAAGCCCCACAAGCCCTGGTTCACCGTGACTCGCCCGATTCACTACATGCTCCGCGAGCAGCGACTCGTCTTCGTCCTCGTCGGCGTCATCATAGCAACCCTCTTCTTCACACTCGTCCCTTCCTCATCCTCTTCAAGCGTTCCGTACGAGTCTCTCCCGATCTCGTACTTCGAGCGCGAGTCAAAGATTCCGGCGTACCACCACCGCGTCGCTGCGGCGGTGCACTCGGTGGGGAAGGTGCCGTTGGGAATTAAGAGGAAGGGGCTCCGGATCGTGGTGACCGGCGGCGCGGGGTTCGTTGGGTCGCACCTGGTGGATCGGTTGATTGCGAGAGGGGACAGCGTGATCGTGGTGGACAATTTCTTCACGGGAAGAAAAGAGAACGTGATGCATCATTTTGGAAACCCTAGATTCGAGCTCATTCGACACGACGTCGTTGAGCCTCTCCTTCTCGAGGTCGATCAGATCTACCATCTGGCTTGCCCTGCTTCCCCTGTCCACTACAAGTTCAATCCCGTCAAGACTATCAAGACCAATGTGGTGGGGACCTTGAACATGCTTGGTCTAGCTAAGCGAGTGGGAGCGAGGTTCTTGTTGACGAGTACCAGTGAGGTTTATGGAGATCCTCTGCAGCACCCTCAGAAGGAGACTTACTGGGGAAACGTCAACCCAATTGGTGTCCGAAGCTGCTACGACGAGGGAAAGCGTACGGCCGAGACGTTGACCATGGACTACCACCGAGGTGCCGGCGTTGAGGTTAGAATTGCTAGAATCTTTAACACCTACGGGCCTAGAATGTGCTTAGATGATGGCCGTGTTGTTAGTAACTTCGTTGCTCAGGCACTAAGGAAGGAGCCTTTGACCGTTTATGGAGATGGGAAACAGACAAGAAGTTTCCAATATGTCTCTGATTTGGTGGAGGGTCTAATCCGCCTTATGGAAGGAGAACACGTGGGACCTTTCAATCTTGGAAATCCCGGAGAATTTACCATGCTTGAACTTGCCAAGGTAAAGTTGGGTTTTTCTTCAAATATAATTTTATAA

Predicted protein sequences of Glyma10g02290

Limit To All Plant Sequences

>Glyma10g02290.1   sequence type=predicted peptide   gene model=Glyma10g02290   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGSELIFRGHEAQPVDDSYSPKPHKPWFTVTRPIHYMLREQRLVFVLVGVIIATLFFTLVPSSSSSSVPYESLPISYFERESKIPAYHHRVAAAVHSVGKVPLGIKRKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPRFELIRHDVVEPLLLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYGDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMCLDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQYVSDLVEGLIRLMEGEHVGPFNLGNPGEFTMLELAKVVQETIDPDARIEYRPNTEDDPHKRKPDISRAKDQLGWEPKVDLRKGLPLMVSDFRQRIFGDQKEKASVA*

>Glyma10g02290.2   sequence type=predicted peptide   gene model=Glyma10g02290   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGSELIFRGHEAQPVDDSYSPKPHKPWFTVTRPIHYMLREQRLVFVLVGVIIATLFFTLVPSSSSSSVPYESLPISYFERESKIPAYHHRVAAAVHSVGKVPLGIKRKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPRFELIRHDVVEPLLLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYGDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMCLDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQYVSDLVEGLIRLMEGEHVGPFNLGNPGEFTMLELAKVKLGFSSNIIL*

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