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Integrating Genetics and Genomics to Advance Soybean Research


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Report for Sequence Feature Glyma10g02281

Feature Type:gene_model
Chromosome:Gm10
Start:1588705
stop:1591835
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma10g02281
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G62880AT Annotation by Michelle Graham. TAIR10: Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein | chr3:23245103-23246002 REVERSE LENGTH=136 SoyBaseE_val: 4.00E-49ISS
GO:0015031GO-bp Annotation by Michelle Graham. GO Biological Process: protein transport SoyBaseN/AISS
GO:0005744GO-cc Annotation by Michelle Graham. GO Cellular Compartment: mitochondrial inner membrane presequence translocase complex SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0009527GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plastid outer membrane SoyBaseN/AISS
GO:0015450GO-mf Annotation by Michelle Graham. GO Molecular Function: P-P-bond-hydrolysis-driven protein transmembrane transporter activity SoyBaseN/AISS
PTHR14110Panther TRANSLOCASE OF INNER MITOCHONDRIAL MEMBRANE TIM22 JGI ISS
PF02466PFAM Tim17/Tim22/Tim23 family JGI ISS
UniRef100_B9SAS0UniRef Annotation by Michelle Graham. Most informative UniRef hit: Protein translocase, putative n=1 Tax=Ricinus communis RepID=B9SAS0_RICCO SoyBaseE_val: 7.00E-50ISS
UniRef100_UPI000233CDC5UniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233CDC5 related cluster n=1 Tax=unknown RepID=UPI000233CDC5 SoyBaseE_val: 4.00E-86ISS

Expression Patterns of Glyma10g02281
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma10g02281 not represented in the dataset
Glyma10g02281 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma10g02281 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.10g018300 Wm82.a2.v1IGC As supplied by JGI

References for Glyma10g02281
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma10g02281
>Glyma10g02281.1   sequence type=CDS   gene model=Glyma10g02281   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAGAAGACCTGGACGGCGTCGCTCCGTGCTCCTCCCTCGCCGTCGAGGCTATGATTCGTGTCGGAGCGGCCGGTGCAATCTGGGGCTTGTGTGCTGGTCCTTACGACGCTCGTCAACAGGGTCTTAGAGGCTCTGCTAAAGCTTCTTTTGTGGCAAAGTCGGTTGGCAGGTTTGGGACTCGATGCGGGTTTGTAGCTGGCGTTTTCAGTATTACGCGATGCGGGGTTCAGAGGTACCGAGGGCGGAATGATTGGGTCAATGGTTTGATTGGGGGTGCTGTAGCAGGTGCAGCTGCTGCTGCTGCTGCTGGGACACGAAGTTGGTCACAGGTGATAGGGATGGCCGGTTTGGTTTCTGTTTTCTGTGCTGCAGCTGACTATTCCAGAACATCTTAA
Predicted protein sequences of Glyma10g02281
>Glyma10g02281.1   sequence type=predicted peptide   gene model=Glyma10g02281   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEEDLDGVAPCSSLAVEAMIRVGAAGAIWGLCAGPYDARQQGLRGSAKASFVAKSVGRFGTRCGFVAGVFSITRCGVQRYRGRNDWVNGLIGGAVAGAAAAAAAGTRSWSQVIGMAGLVSVFCAAADYSRTS*






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