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Report for Sequence Feature Glyma10g02270

Feature Type:gene_model
Chromosome:Gm10
Start:1586452
stop:1588589
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma10g02270
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G05560AT Annotation by Michelle Graham. TAIR10: Ribosomal L22e protein family | chr3:1614641-1615204 FORWARD LENGTH=124 SoyBaseE_val: 5.00E-61ISS
GO:0001510GO-bp Annotation by Michelle Graham. GO Biological Process: RNA methylation SoyBaseN/AISS
GO:0006412GO-bp Annotation by Michelle Graham. GO Biological Process: translation SoyBaseN/AISS
GO:0005622GO-cc Annotation by Michelle Graham. GO Cellular Compartment: intracellular SoyBaseN/AISS
GO:0005730GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleolus SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0005829GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytosol SoyBaseN/AISS
GO:0005840GO-cc Annotation by Michelle Graham. GO Cellular Compartment: ribosome SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0009506GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma SoyBaseN/AISS
GO:0022625GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytosolic large ribosomal subunit SoyBaseN/AISS
GO:0022626GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytosolic ribosome SoyBaseN/AISS
GO:0003735GO-mf Annotation by Michelle Graham. GO Molecular Function: structural constituent of ribosome SoyBaseN/AISS
KOG3434 KOG 60S ribosomal protein L22 JGI ISS
PTHR10064Panther 60S RIBOSOMAL PROTEIN L22 JGI ISS
PF01776PFAM Ribosomal L22e protein family JGI ISS
UniRef100_C6SVK2UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6SVK2_SOYBN SoyBaseE_val: 7.00E-80ISS
UniRef100_G7IF49UniRef Annotation by Michelle Graham. Most informative UniRef hit: 60S ribosomal protein L22-like protein n=1 Tax=Medicago truncatula RepID=G7IF49_MEDTR SoyBaseE_val: 2.00E-65ISS

Expression Patterns of Glyma10g02270
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma10g02270
ParalogEvidenceComments
Glyma02g02140 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma10g02270 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.10g018200 Wm82.a2.v1IGC As supplied by JGI

References for Glyma10g02270
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma10g02270
>Glyma10g02270.1   sequence type=CDS   gene model=Glyma10g02270   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGCGGAGCGAAGGGGAAGAAGAAGGGAGCGAGCTTTGTGATCGATTGCGCGAAGCCGGTGGAGGATAAAATTATGGACATTGCTTCTCTGGAGAAGTTCCTTCAGGAGAGGATTAAGGTTGGCGGCAAGGCCGGTGCACTCGGCGATTCCATTACTGTCACTAGGGACAAGAGCAAGATCACCGTCACCTCCGACAGCAACTTCTCTAAACGGTATCTGAAATATTTGACCAAGAAGTACTTGAAAAAGCACAATGTGAGGGATTGGCTTCGCGTGATTGCATCCAACAAGGAGCGGAGTGTCTATGAATTGAGATACTTCAACATCGCTGAGAACGAGGGTGAAGAGGAAGACTGA
Predicted protein sequences of Glyma10g02270
>Glyma10g02270.1   sequence type=predicted peptide   gene model=Glyma10g02270   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSGAKGKKKGASFVIDCAKPVEDKIMDIASLEKFLQERIKVGGKAGALGDSITVTRDKSKITVTSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKERSVYELRYFNIAENEGEEED*






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