Glyma10g02260 - SoyBase

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Report for Sequence Feature Glyma10g02260

Feature Type:	gene_model
Chromosome:	Gm10
Start:	1579885
stop:	1581591
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma10g02260

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G62890	AT	Annotation by Michelle Graham. TAIR10: Pentatricopeptide repeat (PPR) superfamily protein \| chr3:23246168-23247973 FORWARD LENGTH=573	SoyBase	E_val: 0	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
PTHR24015	Panther	FAMILY NOT NAMED	JGI		ISS
PF01535	PFAM	PPR repeat	JGI		ISS
UniRef100_G7JVA7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Pentatricopeptide repeat protein n=1 Tax=Medicago truncatula RepID=G7JVA7_MEDTR	SoyBase	E_val: 1.00E-160	ISS
UniRef100_I1L7U9	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1L7U9_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma10g02260

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma10g02260

Paralog	Evidence	Comments
Glyma02g02130	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma10g02260 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.10g018100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma10g02260

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma10g02260

Limit To All Plant Sequences

>Glyma10g02260.1   sequence type=CDS   gene model=Glyma10g02260   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCGTGCTTCCGCGAAGGCGATATCATGCACGCACCCAAGTCTTCATCTCTCCCACCCCAACATCGAATCGTTCGTGTGGAACAACCTGATTCGAGCAAGCACTAGAAGCAGAGTTCAAAATCCAGCGTTTCCGCCAGCACTCTCTCTCTACCTTCGCATGCGCCTCCATGCCGTGCTTCCCGATCTTCACACCTTCCCATTCCTTCTCCAATCCATCAATACCCCTCATCGAGGTCGCCAACTCCACGCTCAAATCCTTCTCCTTGGTCTCGCCAACGACCCTTTTGTTCAAACCTCCCTTATCAACATGTACTCTTCATCCGGCATGATTCACATTGCGCGGAAACTGTTCGATCAAATGCCTGAAAAGAACGTCATATCGTGGAGCTGCATGATTCATGGTTACGTAAGCTGTGGCGAGTACAAGGCGGCGCTTTCTTTGTTTCGCAGTTTGCAGACGTTGGAAGGAAGTCAACTCCGACCCAATGAGTTCACCATGTCATCTGTGCTCTCAGCTTGTGCGCGGTTGGGTGCGCTTCAGCATGGAAAGTGGGTTCATGCTTACATTGACAAAACTGGGATGAAAATCGATGTTGTGTTGGGGACTTCTTTGATTGACATGTATGCCAAATGTGGAAGCATTGAAAGGGCGAAATGCATATTCGATAATTTGGGTCCTGAAAAGGATGTGATGGCATGGAGTGCCATGATTACTGCTTTTTCCATGCATGGACTCTCGGAGGAATGCCTTGAACTGTTTGCAAGGATGGTAAATGATGGTGTGAGGCCTAATGCTGTGACGTTTGTGGCTGTTCTTTGTGCTTGTGTGCATGGAGGGTTAGTTAGTGAAGGAAATGAATATTTCAAGAGGATGATGAATGAGTATGGTGTAAGCCCTATGATTCAACATTATGGTTGCATGGTGGACTTATACAGCAGAGCAGGTCGTATTGAGGATGCTTGGAATGTGGTGAAATCAATGCCTATGGAACCTGATGTGATGATATGGGGAGCTCTGCTTAATGGGGCTAGGATTCATGGGGATGTTGAAACTTGCGAGATAGCGATAACGAAGCTTCTTGAGTTGGACCCTGCAAATAGTAGTGCCTACGTTCTTCTTTCTAACGTGTATGCCAAGCTGGGACGGTGGAGGGAAGTGAGGCATTTGAGAGATCTTATGGAGGTCCGGGGAATCAAGAAACTTCCAGGGTGTAGTTTGGTTGAGGTAGATGGCGTTATTCGTGAGTTTTTTGCTGGGGATAATTCTCATCCAGAATTGCTAAATTTATATGTAATGCTTGATGAGATTATGAAGAGGTTGGAAAAGCATGGTTATGAACGTAACACTGGGGAGGTATTACTTGATTTGGATGAGGAAGGGAAGGAGTTTGCATTGTCTCTTCATAGTGAAAAACTGGCAATTGCATATTGCTTCCTCAGGACAAGCCCGGGTACCACAATTCGGATTGTGAAGAACTTGAGGATATGTAGCGATTGCCATGTTGCAATCAAGATTATATCTAAGGAATTTAATAGGGAGATTATTGTTAGAGATTGCAACCGATTTCACCATTTTAAAAATGGGCTTTGCTCCTGCAAAGACTACTGGTAA

Predicted protein sequences of Glyma10g02260

Limit To All Plant Sequences

>Glyma10g02260.1   sequence type=predicted peptide   gene model=Glyma10g02260   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MRASAKAISCTHPSLHLSHPNIESFVWNNLIRASTRSRVQNPAFPPALSLYLRMRLHAVLPDLHTFPFLLQSINTPHRGRQLHAQILLLGLANDPFVQTSLINMYSSSGMIHIARKLFDQMPEKNVISWSCMIHGYVSCGEYKAALSLFRSLQTLEGSQLRPNEFTMSSVLSACARLGALQHGKWVHAYIDKTGMKIDVVLGTSLIDMYAKCGSIERAKCIFDNLGPEKDVMAWSAMITAFSMHGLSEECLELFARMVNDGVRPNAVTFVAVLCACVHGGLVSEGNEYFKRMMNEYGVSPMIQHYGCMVDLYSRAGRIEDAWNVVKSMPMEPDVMIWGALLNGARIHGDVETCEIAITKLLELDPANSSAYVLLSNVYAKLGRWREVRHLRDLMEVRGIKKLPGCSLVEVDGVIREFFAGDNSHPELLNLYVMLDEIMKRLEKHGYERNTGEVLLDLDEEGKEFALSLHSEKLAIAYCFLRTSPGTTIRIVKNLRICSDCHVAIKIISKEFNREIIVRDCNRFHHFKNGLCSCKDYW*

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