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Report for Sequence Feature Glyma10g02250

Feature Type:gene_model
Chromosome:Gm10
Start:1571739
stop:1577618
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma10g02250
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G47600AT Annotation by Michelle Graham. TAIR10: magnesium/proton exchanger | chr2:19524518-19526828 REVERSE LENGTH=539 SoyBaseE_val: 0ISS
GO:0006812GO-bp Annotation by Michelle Graham. GO Biological Process: cation transport SoyBaseN/AISS
GO:0006826GO-bp Annotation by Michelle Graham. GO Biological Process: iron ion transport SoyBaseN/AISS
GO:0006829GO-bp Annotation by Michelle Graham. GO Biological Process: zinc ion transport SoyBaseN/AISS
GO:0015693GO-bp Annotation by Michelle Graham. GO Biological Process: magnesium ion transport SoyBaseN/AISS
GO:0035725GO-bp Annotation by Michelle Graham. GO Biological Process: sodium ion transmembrane transport SoyBaseN/AISS
GO:0055085GO-bp Annotation by Michelle Graham. GO Biological Process: transmembrane transport SoyBaseN/AISS
GO:0005774GO-cc Annotation by Michelle Graham. GO Cellular Compartment: vacuolar membrane SoyBaseN/AISS
GO:0016021GO-cc Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane SoyBaseN/AISS
GO:0005432GO-mf Annotation by Michelle Graham. GO Molecular Function: calcium:sodium antiporter activity SoyBaseN/AISS
GO:0015491GO-mf Annotation by Michelle Graham. GO Molecular Function: cation transport SoyBaseN/AISS
KOG1306 KOG Ca2+/Na+ exchanger NCX1 and related proteins JGI ISS
PTHR11878Panther SODIUM/CALCIUM EXCHANGER JGI ISS
PTHR11878:SF3Panther SODIUM/CALCIUM EXCHANGER 1 SLC8A1-RELATED JGI ISS
PF01699PFAM Sodium/calcium exchanger protein JGI ISS
UniRef100_G7IF47UniRef Annotation by Michelle Graham. Most informative UniRef hit: Sodium/calcium exchanger n=1 Tax=Medicago truncatula RepID=G7IF47_MEDTR SoyBaseE_val: 0ISS
UniRef100_I1L7U8UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1L7U8_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma10g02250
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma10g02250 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.10g018000 Wm82.a2.v1IGC As supplied by JGI

References for Glyma10g02250
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma10g02250
>Glyma10g02250.1   sequence type=CDS   gene model=Glyma10g02250   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTTCCCTTTTCCAACATACTGGGGCACGAAAAGTGTGAAAGCTACTTAATTTTTGGCGGAGAAACTACCCTTGGAGATAATTTTCGGGCATTTTTTTACTTCCTTTGCCTTGCTTATTGTTTTATCGGATTATCGGCTATAACTGCTCGCTTTTTTCAATCGATGGAAAATGTGGTCAAGCACACAAGGAAGGTAGTGGAGGTAGATCCTGTTACTAAAACTGAAACTATTAGGCATGAAAAAGTTTGGAATTACACTATTGCGGATATTAGCTTGTTGACCTTTGGAACTAGCTTTCCCCAGATATCATTAGCCACCATTGATGCTATACAAAACATAGGGAAGCTGTATGCTGGAGGTTTGGGACCCGGAACACTTGTTGGTTCTGCAGCATTTGACCTGTTCCCCATCCACGCTGTTTGTGTAGTAGTTCCAAAAGCAGGAGAGCTGAAGAAGATTGCTGATCTAGGAGTATGGCTGGTGGAGCTGTTTTGGTCATTCTGGGCTTACATTTGGTTATACATAATTTTGGAGGTATGGACTCCAAACGTTGTGACTCTCTGGGAGGCATTGTTGACTGTACTGCAATACGGATTACTATTGACTCATGCTTATGCTCAAGACAAACGTTGGCCATATATTTCTCTACCTATTGCAAGAGATGAGAGGCCAGAGGATTGGGTGCCGGAAGAGACTCCTTATTTTCAACATGAAGCCCATGCGGAGGTGGATTTCTCTGATATAAAGCATGTTAATGAAGAAAATGGGGACACTGTTGATATTTTTTCCATTCATTCAGAAAACCCCACGGATCCATTATATGCCAGAGTACCTTCAATAAATGATGAGGCTGAAATTTTGGACAAAGCTAAGGAAACGACATTGGTGGATACACACTTGCTTACAATTTGGAGACAGCAATTTCTGGATGCACTGAGGTTGTTGAGACCAGAATCAAAAAAAATAAAAAATGCATGTCTCCGCTTAGCTTGTATTTTCTGGCAATTGCTGATTTTACCTTGGAGGTTTCTGTTTGCATTTGTTCCTCCATGCCAAATTGCTCATGGATGGATCTCCTTCATTTGCTCTCTGCTTTTCATCTCTGGGATAGCTTACGTTGTGACTAAGATCACAGATGTTATAAGTTGTGTCACAGGGATAAATGCTTACGTGATAGCATTTACAGCCCTAGCCAGTGGAACCTCATGGCCTGATCTAGTGGCAAGCAAAATTGCTGCAGAACGTCAAAAAACTGCTGATTCTGCAATTGCAAACATCACTTGCAGCAATTCAGTGAATATATATGTTGGTATTGGTGTTCCATGGCTTATTGATACTTTGTACAACTTCATAGCATATAGAGAACCTCTCCGAATCCAAAATGCAGGGGGACTAAGCTTTTCGTTGATTGTTTTCTTCTCCACTTCTGTCGGGTGTATCTCAGTTTTGGTTTTAAGGCGTATAATTTTTGGCGCAGAGCTAGGAGGGCCTAGGCTCTGGGCATGGATTACCTGTGCGTTCTTCATGTTGTTGTGGATTATTTTTGTTGTACTATCGTCACTCAAGGTTTCTGGATTCATTTAG
Predicted protein sequences of Glyma10g02250
>Glyma10g02250.1   sequence type=predicted peptide   gene model=Glyma10g02250   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVPFSNILGHEKCESYLIFGGETTLGDNFRAFFYFLCLAYCFIGLSAITARFFQSMENVVKHTRKVVEVDPVTKTETIRHEKVWNYTIADISLLTFGTSFPQISLATIDAIQNIGKLYAGGLGPGTLVGSAAFDLFPIHAVCVVVPKAGELKKIADLGVWLVELFWSFWAYIWLYIILEVWTPNVVTLWEALLTVLQYGLLLTHAYAQDKRWPYISLPIARDERPEDWVPEETPYFQHEAHAEVDFSDIKHVNEENGDTVDIFSIHSENPTDPLYARVPSINDEAEILDKAKETTLVDTHLLTIWRQQFLDALRLLRPESKKIKNACLRLACIFWQLLILPWRFLFAFVPPCQIAHGWISFICSLLFISGIAYVVTKITDVISCVTGINAYVIAFTALASGTSWPDLVASKIAAERQKTADSAIANITCSNSVNIYVGIGVPWLIDTLYNFIAYREPLRIQNAGGLSFSLIVFFSTSVGCISVLVLRRIIFGAELGGPRLWAWITCAFFMLLWIIFVVLSSLKVSGFI*






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