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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G47590 | AT | Annotation by Michelle Graham. TAIR10: photolyase/blue-light receptor 2 | chr2:19521888-19523732 FORWARD LENGTH=447 | SoyBase | E_val: 0 | ISS |
| GO:0000023 | GO-bp | Annotation by Michelle Graham. GO Biological Process: maltose metabolic process | SoyBase | N/A | ISS |
| GO:0006281 | GO-bp | Annotation by Michelle Graham. GO Biological Process: DNA repair | SoyBase | N/A | ISS |
| GO:0006655 | GO-bp | Annotation by Michelle Graham. GO Biological Process: phosphatidylglycerol biosynthetic process | SoyBase | N/A | ISS |
| GO:0016117 | GO-bp | Annotation by Michelle Graham. GO Biological Process: carotenoid biosynthetic process | SoyBase | N/A | ISS |
| GO:0019252 | GO-bp | Annotation by Michelle Graham. GO Biological Process: starch biosynthetic process | SoyBase | N/A | ISS |
| GO:0019288 | GO-bp | Annotation by Michelle Graham. GO Biological Process: isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0003913 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: DNA photolyase activity | SoyBase | N/A | ISS |
| KOG0133 | KOG | Deoxyribodipyrimidine photolyase/cryptochrome | JGI | ISS | |
| PTHR11455 | Panther | DNA PHOTOLYASE | JGI | ISS | |
| PF00875 | PFAM | DNA photolyase | JGI | ISS | |
| PF03441 | PFAM | FAD binding domain of DNA photolyase | JGI | ISS | |
| UniRef100_G7IF46 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: DNA photolyase protein n=1 Tax=Medicago truncatula RepID=G7IF46_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1L7U6 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1L7U6_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma10g02240 not represented in the dataset |
Glyma10g02240 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma02g02110 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.10g017900 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma10g02240.2 sequence type=transcript gene model=Glyma10g02240 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high CAATTCAAAAAATGAAAAAGAATCTGAGATGAAAAATATATAAATAAAAAGGCATGATAATGGTATAATCCATAGATAGCAGATAAGGGAAGAAGAGGTTTTCGTTTGGTTAAGCAAGATGGATTTGGAAGCAGAGAAAGAGCATGAAGCTGCATTTGCAGTGGCCTCACTCTCCCTCTCTCTCCCCACCATTTTCCCCTTCGTCCAACCCAAGAATATCCCATCAACCACCCTTCAACCAACCAAGCTCAAAGTCCCAACCCAAGCCTCATCCCTCACACACCTTTCTCTCTCCACCACCACTCCTCCTCCTTCCAAAACCTCCTTCAAATCCACCGTCTCCGCCAACCCCCTCCACGCCCCTCTCTCCCTCGCTCCCCACCGCCCCCGCGACCCTTCCAACGCCGCCGCCCTCCGCCGCGCCGCCGTCGTCTGGTTCCGCAACGACCTCCGCCTCCTCGACAATGAGTGCCTCACCGCCGCCAACAACGACTCCCTCTCCGTCCTCCCCGTCTACTGCTTCGACCCCTCCGACTACGGCAAGTCGGCATCCGGCTTCGACAAGACCGGCCCCTACCGCGCCGCCTTCCTCATCGACTCCGTCTCCGACCTCCGCCGCAGCCTCCAGGCGCGCGGCTCCGATCTCGTCGTGCGCGTCGGGAAGCCCGAGACGGTGCTGGTGGAGCTCGCCAAGGCCGTCGGTGCCGACGCCGTGTACGCCCACCGCGAGGTCTCTCACGACGAGGCGAAGGCGGAGGAGAAGGTGGAGGCGGCGATGAAGGAGGAGAATGTGGAGGTGAAGTACTTCTGGGGAAGCACGTTGTATCACGTGGACGATTTGCCTTTTCAATTGGAGGACATGCCTTCCAATTACGGAGGGTTTAGGGATAGGGTTCAGAAATTGGAGGTAAGGAAGACAATTGAAGCTTTAGATCATCTTAAGGGAATGCCTTCTCGCGGTGATTTTGAGCTTGGGGAGATTCCTTCCTTAATGGACCTTGGCCTTAATCCATCTGCAACAATGTCACAGGTTTTGTATTTTAACCACCTTTTCCTCCTTCCCAACCAACCTTATATCTCCGCTTTTTATTTTTAACTTGTTGTGTCTTTGTTTCTATGCATTCTTGTGTTAGCATCAATGGTTTATATATATATTGGTTGCTAATTGTTATCATTTTGCAGGATGGGAAGTTTGGTGCCAATGCTTCTATGATAGGAGGGGAGACTGAGGCACTGCAGAGGCTCAAAAAATTTGCAGCTGAGTGTGCAGCTCAGCCAAACAAGGGGTTTAAGGATGGGACACAGAGTATATATGGTGCCAACTTCTCCTGCAAGATTTCTCCGTGGTTGGCAATGGGATGCCTCTCCCCTCGCACGATGTATGAAGAACTAAAGAAGACTACCAGCAGAGCCATTTCTGCTTCGGCGGACAAGAACGATGGTGGTAATGGCTCGTCCAGAAACGGTACAAATTGGTTGATGTTTGAGTTGCTATGGAGGGACTTCTTTAGGTTTATAACAAAAAAATACAGTTCTGCAAAGAAACAGCTGGAAGCTGCTCCGGTCACTGCATGTGCTGGAGCATATGCTTAAGCTGGAAGTTCTAGTGGGCATTAAAGAGTTTGTTTCAGGGTGTGGGTTGGTTCCCTACGCAGACATGGCAGTAGGGTGCTCGATGAACAAGATTTGGTTCCCCTTCTGAAGTTCTGTTGTAACTGACAGATACATTATATTTCAATATGGAAGCTTTACATTATTTTCTCGAAGGCAAGTGTTGGTATTCTTAGAGTAACATTTCGTCTGCATCGGGCATCTTTTGAGTAGATCTTTGAGTCCAAAATTCATGTCTTTGTCTCTCCCCCAGTAACTCGATATTGTGGGTGAAATTTGAAAATTAAAAATGGATGTAATTACTACGGCATCTATATTTTTAATAATACCAGGATGAATTCTCTGGGTTTTTTCAGTTATGATTAAGAAAGCTGGTTAGATAAGAATTATACAATCAATTTTGATGAGAGCGGAAAG
>Glyma10g02240.1 sequence type=CDS gene model=Glyma10g02240 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGATTTGGAAGCAGAGAAAGAGCATGAAGCTGCATTTGCAGTGGCCTCACTCTCCCTCTCTCTCCCCACCATTTTCCCCTTCGTCCAACCCAAGAATATCCCATCAACCACCCTTCAACCAACCAAGCTCAAAGTCCCAACCCAAGCCTCATCCCTCACACACCTTTCTCTCTCCACCACCACTCCTCCTCCTTCCAAAACCTCCTTCAAATCCACCGTCTCCGCCAACCCCCTCCACGCCCCTCTCTCCCTCGCTCCCCACCGCCCCCGCGACCCTTCCAACGCCGCCGCCCTCCGCCGCGCCGCCGTCGTCTGGTTCCGCAACGACCTCCGCCTCCTCGACAATGAGTGCCTCACCGCCGCCAACAACGACTCCCTCTCCGTCCTCCCCGTCTACTGCTTCGACCCCTCCGACTACGGCAAGTCGGCATCCGGCTTCGACAAGACCGGCCCCTACCGCGCCGCCTTCCTCATCGACTCCGTCTCCGACCTCCGCCGCAGCCTCCAGGCGCGCGGCTCCGATCTCGTCGTGCGCGTCGGGAAGCCCGAGACGGTGCTGGTGGAGCTCGCCAAGGCCGTCGGTGCCGACGCCGTGTACGCCCACCGCGAGGTCTCTCACGACGAGGCGAAGGCGGAGGAGAAGGTGGAGGCGGCGATGAAGGAGGAGAATGTGGAGGTGAAGTACTTCTGGGGAAGCACGTTGTATCACGTGGACGATTTGCCTTTTCAATTGGAGGACATGCCTTCCAATTACGGAGGGTTTAGGGATAGGGTTCAGAAATTGGAGGTAAGGAAGACAATTGAAGCTTTAGATCATCTTAAGGGAATGCCTTCTCGCGGTGATTTTGAGCTTGGGGAGATTCCTTCCTTAATGGACCTTGGCCTTAATCCATCTGCAACAATGTCACAGGATGGGAAGTTTGGTGCCAATGCTTCTATGATAGGAGGGGAGACTGAGGCACTGCAGAGGCTCAAAAAATTTGCAGCTGAGTGTGCAGCTCAGCCAAACAAGGGGTTTAAGGATGGGACACAGAGTATATATGGTGCCAACTTCTCCTGCAAGATTTCTCCGTGGTTGGCAATGGGATGCCTCTCCCCTCGCACGATGTATGAAGAACTAAAGAAGACTACCAGCAGAGCCATTTCTGCTTCGGCGGACAAGAACGATGGTGGTAATGGCTCGTCCAGAAACGGTACAAATTGGTTGATGTTTGAGTTGCTATGGAGGGACTTCTTTAGGTTTATAACAAAAAAATACAGTTCTGCAAAGAAACAGCTGGAAGCTGCTCCGGTCACTGCATGTGCTGGAGCATATGCTTAA >Glyma10g02240.2 sequence type=CDS gene model=Glyma10g02240 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGATTTGGAAGCAGAGAAAGAGCATGAAGCTGCATTTGCAGTGGCCTCACTCTCCCTCTCTCTCCCCACCATTTTCCCCTTCGTCCAACCCAAGAATATCCCATCAACCACCCTTCAACCAACCAAGCTCAAAGTCCCAACCCAAGCCTCATCCCTCACACACCTTTCTCTCTCCACCACCACTCCTCCTCCTTCCAAAACCTCCTTCAAATCCACCGTCTCCGCCAACCCCCTCCACGCCCCTCTCTCCCTCGCTCCCCACCGCCCCCGCGACCCTTCCAACGCCGCCGCCCTCCGCCGCGCCGCCGTCGTCTGGTTCCGCAACGACCTCCGCCTCCTCGACAATGAGTGCCTCACCGCCGCCAACAACGACTCCCTCTCCGTCCTCCCCGTCTACTGCTTCGACCCCTCCGACTACGGCAAGTCGGCATCCGGCTTCGACAAGACCGGCCCCTACCGCGCCGCCTTCCTCATCGACTCCGTCTCCGACCTCCGCCGCAGCCTCCAGGCGCGCGGCTCCGATCTCGTCGTGCGCGTCGGGAAGCCCGAGACGGTGCTGGTGGAGCTCGCCAAGGCCGTCGGTGCCGACGCCGTGTACGCCCACCGCGAGGTCTCTCACGACGAGGCGAAGGCGGAGGAGAAGGTGGAGGCGGCGATGAAGGAGGAGAATGTGGAGGTGAAGTACTTCTGGGGAAGCACGTTGTATCACGTGGACGATTTGCCTTTTCAATTGGAGGACATGCCTTCCAATTACGGAGGGTTTAGGGATAGGGTTCAGAAATTGGAGGTAAGGAAGACAATTGAAGCTTTAGATCATCTTAAGGGAATGCCTTCTCGCGGTGATTTTGAGCTTGGGGAGATTCCTTCCTTAATGGACCTTGGCCTTAATCCATCTGCAACAATGTCACAGGTTTTGTATTTTAACCACCTTTTCCTCCTTCCCAACCAACCTTATATCTCCGCTTTTTATTTTTAA
>Glyma10g02240.1 sequence type=predicted peptide gene model=Glyma10g02240 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MDLEAEKEHEAAFAVASLSLSLPTIFPFVQPKNIPSTTLQPTKLKVPTQASSLTHLSLSTTTPPPSKTSFKSTVSANPLHAPLSLAPHRPRDPSNAAALRRAAVVWFRNDLRLLDNECLTAANNDSLSVLPVYCFDPSDYGKSASGFDKTGPYRAAFLIDSVSDLRRSLQARGSDLVVRVGKPETVLVELAKAVGADAVYAHREVSHDEAKAEEKVEAAMKEENVEVKYFWGSTLYHVDDLPFQLEDMPSNYGGFRDRVQKLEVRKTIEALDHLKGMPSRGDFELGEIPSLMDLGLNPSATMSQDGKFGANASMIGGETEALQRLKKFAAECAAQPNKGFKDGTQSIYGANFSCKISPWLAMGCLSPRTMYEELKKTTSRAISASADKNDGGNGSSRNGTNWLMFELLWRDFFRFITKKYSSAKKQLEAAPVTACAGAYA* >Glyma10g02240.2 sequence type=predicted peptide gene model=Glyma10g02240 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MDLEAEKEHEAAFAVASLSLSLPTIFPFVQPKNIPSTTLQPTKLKVPTQASSLTHLSLSTTTPPPSKTSFKSTVSANPLHAPLSLAPHRPRDPSNAAALRRAAVVWFRNDLRLLDNECLTAANNDSLSVLPVYCFDPSDYGKSASGFDKTGPYRAAFLIDSVSDLRRSLQARGSDLVVRVGKPETVLVELAKAVGADAVYAHREVSHDEAKAEEKVEAAMKEENVEVKYFWGSTLYHVDDLPFQLEDMPSNYGGFRDRVQKLEVRKTIEALDHLKGMPSRGDFELGEIPSLMDLGLNPSATMSQVLYFNHLFLLPNQPYISAFYF*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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