Report for Sequence Feature Glyma10g02220
Feature Type: gene_model
Chromosome: Gm10
Start: 1539222
stop: 1547901
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma10g02220
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT4G02390 AT
Annotation by Michelle Graham. TAIR10: poly(ADP-ribose) polymerase | chr4:1050104-1053960 FORWARD LENGTH=637
SoyBase E_val: 0 ISS
GO:0006302 GO-bp
Annotation by Michelle Graham. GO Biological Process: double-strand break repair
SoyBase N/A ISS
GO:0006471 GO-bp
Annotation by Michelle Graham. GO Biological Process: protein ADP-ribosylation
SoyBase N/A ISS
GO:0010332 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to gamma radiation
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0003676 GO-mf
Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding
SoyBase N/A ISS
GO:0003950 GO-mf
Annotation by Michelle Graham. GO Molecular Function: NAD+ ADP-ribosyltransferase activity
SoyBase N/A ISS
KOG1037
KOG
NAD+ ADP-ribosyltransferase Parp, required for poly-ADP ribosylation of nuclear proteins
JGI ISS
PTHR15447 Panther
POLY [ADP-RIBOSE] POLYMERASE
JGI ISS
PF00644 PFAM
Poly(ADP-ribose) polymerase catalytic domain
JGI ISS
PF02037 PFAM
SAP domain
JGI ISS
PF02877 PFAM
Poly(ADP-ribose) polymerase, regulatory domain
JGI ISS
PF05406 PFAM
WGR domain
JGI ISS
UniRef100_G7IF43 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Poly n=1 Tax=Medicago truncatula RepID=G7IF43_MEDTR
SoyBase E_val: 0 ISS
UniRef100_I1L7U4 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1L7U4_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma10g02220
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma10g02220
Paralog Evidence Comments
Glyma02g02080 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma10g02220 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.10g017700 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma10g02220
Coding sequences of Glyma10g02220
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma10g02220.2 sequence type=CDS gene model=Glyma10g02220 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGAAGGAGGGACTTGAGAAAGGTGTTTGGGAGGGGGCGGAGTGGAAGTTAGCTGATAGTGAGAAAACAAGGTTTTGGATGGATTGTTGGGGAGGGAATGAGAGTTTTGTTGACAGATTTCCTAGACTCTGTCTAAATTCTGAACAACAAACACACTTGGTGAAAGACATGGGAAGGCAAAGATGGTTGGAAGCTTCAAAATCAAAATTGAAAGCTGAGAGTAGTAGAGTAACGCAACCCATTCCATTTCCCTCTAAAATGGCGTCAAGTAAAATGAGGGTGGAGGAGCTGCGAACGGAGCTCCTCCACCGTGGACTCTCCACCACCGGAACCAAACCCACTCTGGTCCGTAGGCTTGAAGCCGCTCTTCGTAAACAAACGACGAGTGACGGTGGTGCTTGTTCTCCTCGTAGGACTAGAAAGAGAGCAAGGGATTCGAACCACTCCGAAGAAATCGAGGTTGCAGAGGAGACAAAAGATGAGGAGGAGGAGGAGGAGAAGATAGTCACCGCTACCCAAAAGGGCGTGGCGGTTCTCGACCAGTGGCTTCCGGATTACGTGAAGACAAACTATCATGTTCTGCAACTGGGTGGTGACGTATATGATGCCATGTTGAATCAGACAAATGTTCGGGACAACAATAACAAGTTCTATGTCATTCAAGTTCTCGAATCAGATAATGGCAGTGACTTCCTTGTTTACAATAGATGGGGAAGAGTAGGTATAAAGGGCCAAGATACGATACATGGCCCTTTTAAATCACGTGAGAGTGCCATTCAGGAGTTTGAACAAAAGTTTTTAGCTAAGACCAAGAATGATTGGTCCAATAGGAATAATTTTGTTTCCTATCCTAAAAGTTATGCTTGGTTGGAAATGGACTACAGTGGCAAGAAAAATGAATCTACTGTTACAGAAAATCCTGGCCATTCTTTAGGAAAGCAGCCTCAGGAATCTAAACTTGAGCCACGTGTTGCAAAATTTATATCTCTTGTTTGCAACATGAGCATGATGAATCAGCAAATGATGGAAATAGGGTACAATGCGAAGAAGTTGCCCCTTGGAAAACTTAGCAAATCAACAATTTTGAAGGGCTATGAAGTTCTCAAAAGACTTGCTAATGTGATTGATAAAGGTGATAGGAAAGTTCTGGAGCAATTAAGTGGAGAACTCTACACTGTAATTCCTCATGATTTTGGATTCAAAAAAATGTGCGAGTTTGTAATTGACACCCCTCAGAAGTTAAAACGAAAGTTAGAAATGGTTGAGGCACTTGCTGAAATTGAGGTTGCCACAAAGCTCTTGAAAGATGACACAGAAATGCAGGGAGATCCTCTGTATACTCATTATCAATGCCTTCATTGCGAACTGGTACCAGTTGAATTTGGTTGTGTGGAATTTTCTATGATTGAAGAGTATATGAAGAACACTCATGCAGAAACACATTCAAACTATACAGTGGATATTGTTCAAATATTCAGGACATCAAGAGAAGGTGAGGCAGAACGGTTCAGAAAGTTTGCTAGTACAAAAAATAGGATGCTTTTGTGGCATGGTTCTCGGCTCACAAACTGGACTGGAATTTTATCTCAAGGTTTGCGCATAGCTCCTCCTGAGGCACCTGTAACTGGCTACATGTTTGGAAAGGGGGTGTACTTTGCTGACATGTTCTCAAAAAGTGCAAATTATTGCTATGCTACTCGAACTGCTAAAGATGGTGTGCTCCTTTTATGTGAGGTTGCACTGGGAGAGATGGCTGAGCTTCTAACTGCAAAATATGATGCTGATCAGTTGCCTAATGGAAAACTGAGCACAAAAGGATTAGGAGGTACTGCTCCTGATCCTTCAAAAGCTCGGGAACTTGAGGATGGGCTCGTAGTTCCCCTAGGAAAGCCCAAAACAAAATCAGGCAAAAAGGGCCATCTATTGTACAATGAATACATTGTTTATAATGTGGAGCAGATTAGGATGCGATATATTGTTCACGTAAATTTCAATTTTAAGACTAGAAGTTAG
Predicted protein sequences of Glyma10g02220
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma10g02220.2 sequence type=predicted peptide gene model=Glyma10g02220 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MKEGLEKGVWEGAEWKLADSEKTRFWMDCWGGNESFVDRFPRLCLNSEQQTHLVKDMGRQRWLEASKSKLKAESSRVTQPIPFPSKMASSKMRVEELRTELLHRGLSTTGTKPTLVRRLEAALRKQTTSDGGACSPRRTRKRARDSNHSEEIEVAEETKDEEEEEEKIVTATQKGVAVLDQWLPDYVKTNYHVLQLGGDVYDAMLNQTNVRDNNNKFYVIQVLESDNGSDFLVYNRWGRVGIKGQDTIHGPFKSRESAIQEFEQKFLAKTKNDWSNRNNFVSYPKSYAWLEMDYSGKKNESTVTENPGHSLGKQPQESKLEPRVAKFISLVCNMSMMNQQMMEIGYNAKKLPLGKLSKSTILKGYEVLKRLANVIDKGDRKVLEQLSGELYTVIPHDFGFKKMCEFVIDTPQKLKRKLEMVEALAEIEVATKLLKDDTEMQGDPLYTHYQCLHCELVPVEFGCVEFSMIEEYMKNTHAETHSNYTVDIVQIFRTSREGEAERFRKFASTKNRMLLWHGSRLTNWTGILSQGLRIAPPEAPVTGYMFGKGVYFADMFSKSANYCYATRTAKDGVLLLCEVALGEMAELLTAKYDADQLPNGKLSTKGLGGTAPDPSKARELEDGLVVPLGKPKTKSGKKGHLLYNEYIVYNVEQIRMRYIVHVNFNFKTRS*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
