Glyma10g02210 - SoyBase

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Report for Sequence Feature Glyma10g02210

Feature Type:	gene_model
Chromosome:	Gm10
Start:	1533205
stop:	1534729
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma10g02210

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G02820	AT	Annotation by Michelle Graham. TAIR10: Late embryogenesis abundant 3 (LEA3) family protein \| chr1:623933-624304 REVERSE LENGTH=91	SoyBase	E_val: 2.00E-19	ISS
GO:0009790	GO-bp	Annotation by Michelle Graham. GO Biological Process: embryo development	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PF03242	PFAM	Late embryogenesis abundant protein	JGI		ISS
UniRef100_C6SZ33	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6SZ33_SOYBN	SoyBase	E_val: 7.00E-62	ISS
UniRef100_P32292	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Indole-3-acetic acid-induced protein ARG2 n=1 Tax=Vigna radiata var. radiata RepID=ARG2_VIGRR	SoyBase	E_val: 6.00E-40	ISS

Expression Patterns of Glyma10g02210

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma10g02210

Paralog	Evidence	Comments
Glyma02g02070	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma10g02210 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.10g017600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma10g02210

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma10g02210

Limit To All Plant Sequences

>Glyma10g02210.1   sequence type=CDS   gene model=Glyma10g02210   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTCGCTCTTTCTCCAACCTCAAGGTTCTCTCTGCTCTTGTCGCCGACGGATTCTCCAACACTCTCACCAGGCGTGGGTACGCAGTAGCGACACAAAGCGCAACAAGAGGAGGAGCAGCCTCCATCAGCGGCAAGTCAGGGGAAGACAAGGTACTAGGAGGAGGTGCTGAAAAGGTTTCGTGGGTCCCAGACCCTGTCACTGGTTACTACAAACCGGAGAACATCAAAGAGATTGATGTTGCTGAGCTGAGAGCCACGGTTTTGGGCAAAAAATTCAACCACTAG

Predicted protein sequences of Glyma10g02210

Limit To All Plant Sequences

>Glyma10g02210.1   sequence type=predicted peptide   gene model=Glyma10g02210   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MARSFSNLKVLSALVADGFSNTLTRRGYAVATQSATRGGAASISGKSGEDKVLGGGAEKVSWVPDPVTGYYKPENIKEIDVAELRATVLGKKFNH*

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