Glyma10g02180 - SoyBase

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Report for Sequence Feature Glyma10g02180

Feature Type:	gene_model
Chromosome:	Gm10
Start:	1522882
stop:	1523950
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma10g02180

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G02360	AT	Annotation by Michelle Graham. TAIR10: Protein of unknown function, DUF538 \| chr4:1041179-1041643 FORWARD LENGTH=154	SoyBase	E_val: 4.00E-50	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PF04398	PFAM	Protein of unknown function, DUF538	JGI		ISS
UniRef100_C6T0U9	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6T0U9_SOYBN	SoyBase	E_val: 9.00E-111	ISS
UniRef100_O81296	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: AT4g02370 protein n=1 Tax=Arabidopsis thaliana RepID=O81296_ARATH	SoyBase	E_val: 2.00E-45	ISS

Expression Patterns of Glyma10g02180

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma10g02180

Paralog	Evidence	Comments
Glyma02g02050	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma10g02180 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.10g017400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma10g02180

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma10g02180

Limit To All Plant Sequences

>Glyma10g02180.1   sequence type=CDS   gene model=Glyma10g02180   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCTTCAATTAGATTCCTATGGATCCTGATGGTGTCTTTGACGGCATCATGCGCGTTAAGCCAACCGCAGAAGCTATCGGCGTACGATGTTCTGATGGAGTACGGGTTCCCGGTGGGTCTTCTTCCCAAGGGAGCCATAGGGTATTCGCTCAACAGAGACAGCGGCGAGTTCGCAGTGTATTTCCAAGGAGCGTGCAGCTTCGACATAGAGTCCTACACGCTCAAGTACAAATCCACCATCACGGGTGTTATCTCCAAGGGCAGGCTCTATAATCTCAAAGGTGTCACCGTCAAAATCTTGCTCCTTTGGCTCAACATCGTCGAGGTCTCTCGTCAGGGGAACGATATTTACTTCTCTGTCGGAATCGCTTCCGCTGATTTTGGCGTCGAGAATTTCCTCGAGAGCCCCCAGTGTGGTTGTGGTTTCGATTGCAAAACACTACCCTTAAACGGTGACGTTTCCGTTTCCTCAATTTAA

Predicted protein sequences of Glyma10g02180

Limit To All Plant Sequences

>Glyma10g02180.1   sequence type=predicted peptide   gene model=Glyma10g02180   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSSIRFLWILMVSLTASCALSQPQKLSAYDVLMEYGFPVGLLPKGAIGYSLNRDSGEFAVYFQGACSFDIESYTLKYKSTITGVISKGRLYNLKGVTVKILLLWLNIVEVSRQGNDIYFSVGIASADFGVENFLESPQCGCGFDCKTLPLNGDVSVSSI*

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