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Report for Sequence Feature Glyma10g02160

Feature Type:gene_model
Chromosome:Gm10
Start:1512239
stop:1515263
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma10g02160
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G02330AT Annotation by Michelle Graham. TAIR10: Plant invertase/pectin methylesterase inhibitor superfamily | chr4:1032479-1034928 FORWARD LENGTH=573 SoyBaseE_val: 0ISS
GO:0009409GO-bp Annotation by Michelle Graham. GO Biological Process: response to cold SoyBaseN/AISS
GO:0009741GO-bp Annotation by Michelle Graham. GO Biological Process: response to brassinosteroid stimulus SoyBaseN/AISS
GO:0015824GO-bp Annotation by Michelle Graham. GO Biological Process: proline transport SoyBaseN/AISS
GO:0042545GO-bp Annotation by Michelle Graham. GO Biological Process: cell wall modification SoyBaseN/AISS
GO:0005576GO-cc Annotation by Michelle Graham. GO Cellular Compartment: extracellular region SoyBaseN/AISS
GO:0005618GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cell wall SoyBaseN/AISS
GO:0004857GO-mf Annotation by Michelle Graham. GO Molecular Function: enzyme inhibitor activity SoyBaseN/AISS
GO:0030599GO-mf Annotation by Michelle Graham. GO Molecular Function: pectinesterase activity SoyBaseN/AISS
PTHR22931Panther PHOSPHOENOLPYRUVATE DIKINASE-RELATED JGI ISS
PTHR22931:SF5Panther METHYLESTERASE INHIBITOR-RELATED JGI ISS
PF01095PFAM Pectinesterase JGI ISS
PF04043PFAM Plant invertase/pectin methylesterase inhibitor JGI ISS
UniRef100_I1L7T9UniRef Annotation by Michelle Graham. Most informative UniRef hit: Pectinesterase n=1 Tax=Glycine max RepID=I1L7T9_SOYBN SoyBaseE_val: 0ISS
UniRef100_I1L7T9UniRef Annotation by Michelle Graham. Best UniRef hit: Pectinesterase n=1 Tax=Glycine max RepID=I1L7T9_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma10g02160
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma10g02160
ParalogEvidenceComments
Glyma02g02020 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma10g02160 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.10g017200 Wm82.a2.v1IGC As supplied by JGI

References for Glyma10g02160
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma10g02160
>Glyma10g02160.1   sequence type=CDS   gene model=Glyma10g02160   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCAACAACAAGTTAACCTTTGTCATCATCCTCATCTTCCTACCCTCATTGTTAGCTTTGGCTGACATCACTCCCAACACTTCCGTTTCTCCCGGAACCATATGCAAATCCACTCCAGACCCTTCTTATTGCAACTCCGTGCTACCTCCCCAAAACGGCAACGTTTACGAATATGGCAGGTTCTCGGTAAGAAAGTCCCTTTCACAGGCCACCAATTTCTTGAACTTAGTTAACAGATACCTCCAACTCCAACGCCGTTCTTCTCTTTCCACCCCCGCAATCCACGCGCTCGAAGATTGCCAAAGCCTCGCCGAACTCAACATAGACTTTCTCTCCAGTTCCTTAGAAACGGTGAACAGAACAACCAAATTTTTACCCACTTCACAGGCTGATGACATTCAAACTCTTTTAAGTGCCATTCTAACAAACCAACAAACATGCTTGGAAGGCCTTCAAGCCACCGCCTCCGCTTGGCGCCTCAAGAACGGACTCTCCGTTCCGCTCTCCAACGACACTAAGCTATACAGTGTCTCTCTGGCACTCTTCACAAAGGGGTGGGTCCCAGAAAATGCTAATGTCACCGCGTTTCAGCCAAGCGCCAAACATCGCGGGTTTCGAAACGGGCGTTTGCCGCTCAAGATGTCGAGCAGAACGCGCGCGATCTACGAGTCGGTGAGTCGGAGAAAGCTCCTGCAGGCGACGGTGGGTGACGAGGTTAAGGTGAAAGACATTGTGACGGTGAGCAAAGATGGAAACGGGAACTTCACCACCATCAGCGACGCCGTGGCCGCGGCGCCGAACAAGACTTCATCCACGGCGGGGTACTTCCTGATCTATGTGACCGCCGGTGTTTACGAGGAAAATGTTTCTATTGATAAGAAAAAGACGTACCTGATGATGGTGGGAGATGGCATCAACAAGACAATTATTACTGGAAATCGCAGTGTTGTTGATGGCTGGACAACCTTTAAGTCAGCGACATTTGCGGTGGTTGGAGCGAGATTCGTGGGTGTGAATATGACCATCCGCAACACTGCCGGAGCAGAGAAGCACCAAGCTGTAGCACTCCGCAACGGCGCAGACTTGTCCACGTTTTACAGCTGCAGCTTCGAAGGGTACCAAGACACACTGTACACTCATTCGCTGCGACAATTCTACAGAGAATGCGACATCTACGGAACCGTCGATTTCATATTCGGAAACGCCGCGGTTGTGTTCCAAAACTGCAACCTCTATCCTCGTCTCCCAATGAGTGGCCAATTCAACTCCATCACCGCACAAGGCCGAACCGACCCTAACCAAAACACCGGCACTTCAATCCACAACTGCACGATTCGACCAGCCGATGATTTGGCAGCGAACATCGATGCCGCTGAAACTTATCTGGGAAGGCCTTGGAAAAATTACTCCAGGACAGTTTACATGCAGAGCTTTATGGACACTGTCATCAATTCTGCTGGGTGGCGCGAATGGGACGGTGATTTTGCTCTGAGCACTCTTTACTATGCAGAGTTTAACAACACTGGACCTGGATCTACCACTGCCAATAGAGTCACGTGGCCGGGTTACCACGTCATTAATGCCACTGTTGCTGCTAATTTTACCGTCGCTAATTTCTTGCTTGGAGATAACTGGCTGCCCCAGACCGGAGTGCCTTACGCCAGTAACTTGATATAG
Predicted protein sequences of Glyma10g02160
>Glyma10g02160.1   sequence type=predicted peptide   gene model=Glyma10g02160   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MANNKLTFVIILIFLPSLLALADITPNTSVSPGTICKSTPDPSYCNSVLPPQNGNVYEYGRFSVRKSLSQATNFLNLVNRYLQLQRRSSLSTPAIHALEDCQSLAELNIDFLSSSLETVNRTTKFLPTSQADDIQTLLSAILTNQQTCLEGLQATASAWRLKNGLSVPLSNDTKLYSVSLALFTKGWVPENANVTAFQPSAKHRGFRNGRLPLKMSSRTRAIYESVSRRKLLQATVGDEVKVKDIVTVSKDGNGNFTTISDAVAAAPNKTSSTAGYFLIYVTAGVYEENVSIDKKKTYLMMVGDGINKTIITGNRSVVDGWTTFKSATFAVVGARFVGVNMTIRNTAGAEKHQAVALRNGADLSTFYSCSFEGYQDTLYTHSLRQFYRECDIYGTVDFIFGNAAVVFQNCNLYPRLPMSGQFNSITAQGRTDPNQNTGTSIHNCTIRPADDLAANIDAAETYLGRPWKNYSRTVYMQSFMDTVINSAGWREWDGDFALSTLYYAEFNNTGPGSTTANRVTWPGYHVINATVAANFTVANFLLGDNWLPQTGVPYASNLI*






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