Glyma10g02140 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma10g02140

Feature Type:	gene_model
Chromosome:	Gm10
Start:	1501990
stop:	1506186
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma10g02140

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G02320	AT	Annotation by Michelle Graham. TAIR10: Plant invertase/pectin methylesterase inhibitor superfamily \| chr4:1022725-1026118 REVERSE LENGTH=518	SoyBase	E_val: 4.00E-178	ISS
GO:0042545	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell wall modification	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0005618	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cell wall	SoyBase	N/A	ISS
GO:0009505	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plant-type cell wall	SoyBase	N/A	ISS
GO:0004857	GO-mf	Annotation by Michelle Graham. GO Molecular Function: enzyme inhibitor activity	SoyBase	N/A	ISS
GO:0030599	GO-mf	Annotation by Michelle Graham. GO Molecular Function: pectinesterase activity	SoyBase	N/A	ISS
PTHR22931	Panther	PHOSPHOENOLPYRUVATE DIKINASE-RELATED	JGI		ISS
PTHR22931:SF5	Panther	METHYLESTERASE INHIBITOR-RELATED	JGI		ISS
PF01095	PFAM	Pectinesterase	JGI		ISS
PF04043	PFAM	Plant invertase/pectin methylesterase inhibitor	JGI		ISS
UniRef100_I1JBK0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Pectinesterase n=2 Tax=Glycine max RepID=I1JBK0_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_UPI000233C4FE	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233C4FE related cluster n=1 Tax=unknown RepID=UPI000233C4FE	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma10g02140

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma10g02140

Paralog	Evidence	Comments
Glyma02g02000	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma10g02140 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.10g017100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma10g02140

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma10g02140

Limit To All Plant Sequences

>Glyma10g02140.2   sequence type=CDS   gene model=Glyma10g02140   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CAAAAACATAAACACCTCCATTTCCAAAAGCACATACAAGTAGTAGCCCAATCCACATGCGAAGGAACACTCTACCCAGACCTATGTGTCTTAACACTAGCCACATTCCCAGATCTCACAACAAAATCTGTCCCACAAGTGATATCCTCAGTGGTCAACCATACCATGTACGAGGTAAGATCAACGTCCTACAACTGCAGCGGCCTCAAAAAGATGCTCAAAAACCTCAACCCACTCGACCAGAGAGCCCTCGACGACTGTCTCAAACTGTTTGAAGACACCAGCGTCGAGCTCAAAGCCACCATCGACGATCTCTCCATCAAGAGCACCATAGGGTCTAAACTGCACCATGACTTGCAGACTCTGCTGAGTGGAGCAATGACCAACTTGTACACGTGCCTCGATGGCTTTGCGTACAGCAAAGGGCGCGTGGGGGACAGAATCGAGAAGAAGCTGCTTCAAATATCGCATCACGTGAGCAACTCGTTGGCCATGCTGAACAAAGTGCCTGGAGTTGAGAAATTAACAACTTCTTCGGAATCTGATGAGGTGTTTCCAGAATATGGAAAGATGCAAAAGGGGTTCCCTTCGTGGGTGTCCTCTAAAGACCGAAAGCTTCTTCAAGCTAAAGTGAATGAGACCAAGTTCAATCTTGTTGTTGCCAAAGATGGCACTGGCAACTTCACCACTATAGGGGAAGCACTGTCTGTGGCTCCCAACTCAAGCACAACTAGGTTTGTGATACACGTAACGGCGGGGGCATACTTCGAGAATGTGGAAGTGATAAGGAAGAAGACGAATCTAATGTTTGTTGGAGACGGTATTGGAAAGACAGTAGTGAAAGGCAGTAGGAATGTTGAGGACGGGTGGACCATTTTTCAATCTGCTACTGTTGCTGTTGTAGGAGCAGGATTCATAGCAAAGGGTATAACATTTGAGAAGTCAGCAGGACCCGACAAACACCAAGCTGTGGCACTGAGAAGTGGTGACACTCTCTACGTCCATTCCCTGCGCCAATTCTACCGTGAACGTGACATTTATGGCACTGTAGACTTCATTTTCGGCAATGCAGCTGTGGTATTCCAAAACTGCAACTTATACGCACGCAAGCCAAACGAAAATCAGAAGAACTTGTTCATGGCACAAGGCAGAGAGGACCCTAACCAAAACACTGGCATATCCATCTTGAACTGCAAGATTGCAGCTGCTGCAGATTTGATCCCTGTGAAATCCTCGTTCAAGAGCTACCTAGGACGTCCTTGGAAAATGTACTCTATGACTGTTGTGTTAAAATCTTACGTGGATATAGACCCAGCAGGGTGGTTGGAATGGAATGAAACATTTGCATTGGATACGTTGTATTATGGGGAGTACATGAATAGGGGTCCATGTTCAAACACAAGTGGTAGGGTTACGTGGCCAGGTTATAGGGTCATTAACAGCTCCATTGAGGCAAGCCAATTCACAGTTGGACAGTTTATTCAAGACAATGATTGGTTGAACAACACTGGCATCCCATTCTTCTCTGGTTTGAGTTGA

Predicted protein sequences of Glyma10g02140

Limit To All Plant Sequences

>Glyma10g02140.2   sequence type=predicted peptide   gene model=Glyma10g02140   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
QKHKHLHFQKHIQVVAQSTCEGTLYPDLCVLTLATFPDLTTKSVPQVISSVVNHTMYEVRSTSYNCSGLKKMLKNLNPLDQRALDDCLKLFEDTSVELKATIDDLSIKSTIGSKLHHDLQTLLSGAMTNLYTCLDGFAYSKGRVGDRIEKKLLQISHHVSNSLAMLNKVPGVEKLTTSSESDEVFPEYGKMQKGFPSWVSSKDRKLLQAKVNETKFNLVVAKDGTGNFTTIGEALSVAPNSSTTRFVIHVTAGAYFENVEVIRKKTNLMFVGDGIGKTVVKGSRNVEDGWTIFQSATVAVVGAGFIAKGITFEKSAGPDKHQAVALRSGDTLYVHSLRQFYRERDIYGTVDFIFGNAAVVFQNCNLYARKPNENQKNLFMAQGREDPNQNTGISILNCKIAAAADLIPVKSSFKSYLGRPWKMYSMTVVLKSYVDIDPAGWLEWNETFALDTLYYGEYMNRGPCSNTSGRVTWPGYRVINSSIEASQFTVGQFIQDNDWLNNTGIPFFSGLS*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain