Glyma10g02130 - SoyBase

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Report for Sequence Feature Glyma10g02130

Feature Type:	gene_model
Chromosome:	Gm10
Start:	1491029
stop:	1493962
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma10g02130

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G02290	AT	Annotation by Michelle Graham. TAIR10: glycosyl hydrolase 9B13 \| chr4:1002654-1005125 REVERSE LENGTH=516	SoyBase	E_val: 0	ISS
GO:0005975	GO-bp	Annotation by Michelle Graham. GO Biological Process: carbohydrate metabolic process	SoyBase	N/A	ISS
GO:0010089	GO-bp	Annotation by Michelle Graham. GO Biological Process: xylem development	SoyBase	N/A	ISS
GO:0044036	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell wall macromolecule metabolic process	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
GO:0004553	GO-mf	Annotation by Michelle Graham. GO Molecular Function: hydrolase activity, hydrolyzing O-glycosyl compounds	SoyBase	N/A	ISS
PTHR22298	Panther	ENDO-1,4-BETA-GLUCANASE	JGI		ISS
PF00759	PFAM	Glycosyl hydrolase family 9	JGI		ISS
UniRef100_B9GSC6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Glycosyl hydrolase family 9 n=1 Tax=Populus trichocarpa RepID=B9GSC6_POPTR	SoyBase	E_val: 0	ISS
UniRef100_I1L7T7	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1L7T7_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma10g02130

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma10g02130

Paralog	Evidence	Comments
Glyma02g01990	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma10g02130 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.10g017000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma10g02130

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma10g02130

Limit To All Plant Sequences

>Glyma10g02130.1   sequence type=CDS   gene model=Glyma10g02130   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACTTTCTCCTTTTCCTTCTTCACCATCACCACTCTGCTTTCTCTGTTCTCTCTAATTCTGCTTCATGCCAATGCCTTCCCAGTCCCCATGCATCGCCACCCTCGCTTTGCCACTCATAACTACAGAGATGCTCTCACTAAATCCATTCTCTTCTTTGAAGGCCAGAGGTCAGGGAAGCTCCCTCCTAACCAGAGAATGTCTTGGAGGAGAGACTCTGGCCTCTCTGATGGCTCAGCCATGCACGTTGATTTAGTTGGAGGGTACTATGATGCTGGGGACAATGTAAAATTTGGTTTTCCCATGGCCTTCACCACCACCATGCTTTCATGGAGCGTTATTGAGTTTGGTGGGCTAATGAAAGGTGAGTTGCAGAATGCCAGAGAGGCCATTCGCTGGGGCACTGATTATCTTCTCAAAGCCACTGCACATCCAAACACCATTTATGTTCAGGTGGGAGACGCTAAGAAGGACCATGCTTGTTGGGAGAGACCAGAGGACATGGACACACTAAGAAGCGTGTTTAAAATAGATGCAAACACACCTGGTTCAGAAGTTGCCGCGGAAACTGCTGCAGCTCTTGCAGCTGCTTCTCTTGTTTTTAGAAGAAGTGACCCCACATACTCCAAAGTTTTAGTGAGGAGAGCCATCAGGGTCTTCCAGTTTGCTGATAAGTACAGGGGATCCTACAGCAATGCCTTGAAACCTTATGTGTGCCCCTTCTATTGCTCTTACTCTGGTTATCAGGATGAGCTGTTGTGGGGTGCTGCCTGGCTGCACAAGGCTACCAGGAATCCAATGTACCTAAACTACATCAAAGTTAATGGCCAGATCCTTGGGGCTGCAGAGTTTGACAACACCTTTGGGTGGGATAACAAGCATGCTGGAGCAAGAATACTTCTTTCCAAGGAATTCCTGGTTCAAAGGGTACAATCCCTCCATGACTACAAGGGTCATGCGGACAATTTCGTCTGTTCTCTAATTCCTGGAACCTCTTTTTCTTCCACTCAATATACCCCAGGTGGGCTTCTTTTCAAGATGAGTGATAGCAACATGCAGTATGTCACATCCACCTCCTTCCTTCTGCTAACATATGCCAAATACTTGACCCAATCCCATATGCTTGTTAACTGTGGTGGAATCACAGTAACCCCAAGGAGACTCCGGACAATAGCTAAGAAACAGGTGGATTACTTGCTTGGAGACAACCCGTTGAAGATGTCGTACATGGTGGGGTATGGTCCACGGTACCCACGAAGGATACACCATAGGGGATCATCTCTACCGTCGATTGCTGTGCACCCGGGAAAGATCCAGTGTTCCGCAGGGTTCAGTGTGATGAATTCACAATCTCCCAACCCAAACATTCTAGTGGGGGCCATTGTTGGTGGACCGGATGAGCATGATAGGTTCCCAGATCAACGGTCAGATTATGAGCAATCAGAGCCAGCTACATACATTAACTCACCCCTTGTAGGAGCACTGGCCTATCTTGCACACTCATTCGGTCAACTCTAG

Predicted protein sequences of Glyma10g02130

Limit To All Plant Sequences

>Glyma10g02130.1   sequence type=predicted peptide   gene model=Glyma10g02130   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTFSFSFFTITTLLSLFSLILLHANAFPVPMHRHPRFATHNYRDALTKSILFFEGQRSGKLPPNQRMSWRRDSGLSDGSAMHVDLVGGYYDAGDNVKFGFPMAFTTTMLSWSVIEFGGLMKGELQNAREAIRWGTDYLLKATAHPNTIYVQVGDAKKDHACWERPEDMDTLRSVFKIDANTPGSEVAAETAAALAAASLVFRRSDPTYSKVLVRRAIRVFQFADKYRGSYSNALKPYVCPFYCSYSGYQDELLWGAAWLHKATRNPMYLNYIKVNGQILGAAEFDNTFGWDNKHAGARILLSKEFLVQRVQSLHDYKGHADNFVCSLIPGTSFSSTQYTPGGLLFKMSDSNMQYVTSTSFLLLTYAKYLTQSHMLVNCGGITVTPRRLRTIAKKQVDYLLGDNPLKMSYMVGYGPRYPRRIHHRGSSLPSIAVHPGKIQCSAGFSVMNSQSPNPNILVGAIVGGPDEHDRFPDQRSDYEQSEPATYINSPLVGALAYLAHSFGQL*

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