Glyma10g02040 - SoyBase

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Report for Sequence Feature Glyma10g02040

Feature Type:	gene_model
Chromosome:	Gm10
Start:	1453909
stop:	1460836
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma10g02040

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G47510	AT	Annotation by Michelle Graham. TAIR10: fumarase 1 \| chr2:19498614-19502020 FORWARD LENGTH=492	SoyBase	E_val: 0	ISS
GO:0006099	GO-bp	Annotation by Michelle Graham. GO Biological Process: tricarboxylic acid cycle	SoyBase	N/A	ISS
GO:0006106	GO-bp	Annotation by Michelle Graham. GO Biological Process: fumarate metabolic process	SoyBase	N/A	ISS
GO:0006979	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to oxidative stress	SoyBase	N/A	ISS
GO:0009651	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to salt stress	SoyBase	N/A	ISS
GO:0048868	GO-bp	Annotation by Michelle Graham. GO Biological Process: pollen tube development	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0045239	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: tricarboxylic acid cycle enzyme complex	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
GO:0004333	GO-mf	Annotation by Michelle Graham. GO Molecular Function: fumarate hydratase activity	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
GO:0016829	GO-mf	Annotation by Michelle Graham. GO Molecular Function: lyase activity	SoyBase	N/A	ISS
KOG1317	KOG	Fumarase	JGI		ISS
PTHR11444	Panther	ASPARTATEAMMONIA/ARGININOSUCCINATE/ADENYLOSUCCINATE LYASE	JGI		ISS
PTHR11444:SF1	Panther	FUMARATE HYDRATASE CLASS II	JGI		ISS
PF00206	PFAM	Lyase	JGI		ISS
PF10415	PFAM	Fumarase C C-terminus	JGI		ISS
UniRef100_I1L7S9	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1L7S9_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_P93033	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Fumarate hydratase 1, mitochondrial n=1 Tax=Arabidopsis thaliana RepID=FUM1_ARATH	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma10g02040

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma10g02040

Paralog	Evidence	Comments
Glyma02g01920	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma10g02040 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.10g016200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma10g02040

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma10g02040

Limit To All Plant Sequences

>Glyma10g02040.4   sequence type=transcript   gene model=Glyma10g02040   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GGGCATTCAACTAACAAAGAGGGGTGGAGTGTGGAATCACTGTGGAGCAGCAATGTCCCCACGTACTAGGCCACTATCAAACCATCCATCAATAATTAGTGTCTTAGCAAATGCTCGTGTAAGGCATAAAAGTGAAGTTTTGGTGGCAAAAAACGTGAAGAGAAGGCTCATTTTCTTGCAAAAAGCGGCAAGTAGTGGCGATGACTTATAAGAGTTGAATTAAATCCATATCGTGCTATTTGCTTTGGAGAAGAATGTGCAACAAGGGCATGCAAACAGTTTAAAAAGTAAAGCATGTATGTGAGTGATGATGAGGCACGCCTTATATAGTCAAAATTGTCTCAACGAACTTCGTAGAATAGAATAGAATCCAATACAAGCCAAGACAATTCATAAGACAACGCGTTTGCATGATCCCATGCGAATTACCAATGAGACAACGACCAAGCCAAGACAAAATGTAGAATAAAGGGAATAGGAAGCATGCTTCAAACAGCAGAAGAATGGTGAGTGATTGATGTGTTTAGCGAAGACGGGTTACAACTTACAAGTTCTATTGGGCCTTACACCAAAAAGGTAACCAAATCCAACTAGCAATGAAAAAAAGTCATAGTTGTGGCCCATTTAAATGCTTTTCATGGACACGAACAAAAGTCATAGTTCGGCTCCAACTTGGAAGAAGACTGCGCAATCGCGTGTCCTTATTGGGTACATACTTTGGCAGTATTGTATTGGTGATTGGTCAGACTAGTGTTATTCTCCGGTGGCTCCTTCCTTCCTTCGCCATGGCGTTCTACGTGCTCTCGCGTCGTTTATCAGCTGGATCCAACTCAACGACGCTCCTCGCCCTGCGTTTTGCTTCCTCTTCCAGATCCTTCTCCTCTTCCTTCAGGGAAGAAAGAGATACCTTTGGACCCATTCAAGTTCCCTCCGACAAATTATGGGGAGCACAAACTCAAAGATCGTTGCAGAACTTCGACATCGGTGGGCCCCGCGAACGCATGCCCGAACCCATCATTCGCGCTTTTGGCGTCTTGAAGAAATGCGCTGCTAAGGTGAACATGGAGTATGGTCTTGATCCCATCGTGGGAGAAGCAATAATGCAAGCGGCACAAGAAGTAGCCGAGGGAAAACTAAACGAACATTTTCCTCTCGTTGTATGGCAAACTGGCAGTGGCACTCAAAGTAACATGAATGCTAACGAGGTTATTGCAAACCGAGCAGCAGAGATTCTTGGCCATAAGCGCGGTGGGAAGTTCGTGCACCCAAATGACCATGTCAATAGATCGCAGTCTTCTAATGATACATTCCCAACCGTAATGCACATTGCAGCCACAATGGAAATAAACTCAAGACTAATTCCCAGCTTGAAAACCTTACACGGTACACTAAACTCAAAGTCAATTGAATTCAAAGATATTGTCAAGATTGGACGCACTCATACTCAAGATGCAACACCTTTGACTCTTGGGCAAGAGTTTAGTGGGTATACTACACAAGTGAAGTACGGTATTGATCGAGTAATTGGCACTTTGCCGCACCTGTATCAGCTTGCCCAGGGTGGTACAGCTGTAGGGACTGGATTGAATACAAAGAAGGGGTTTGATGCCAAGATAGCAGCAGCAGTAGCTGAGGAAACAAATCTGCCTTTTGTTACGGCAGAAAATAAGTTTGAGGCCTTGGCTGCCCATGATGCTTTTGTTGAAACTAGTGGAGCACTTAACACTATTGCGGCTTCTTTGATGAAGATTGCTAATGATATACGGTTGTTAGGAAGTGGTCCACGCTGCGGTCTTGGTGAACTCATTCTTCCTGAAAACGAACCAGGAAGTAGTATCATGCCTGGGAAGGTTAACCCTACCCAGTGTGAGGCTTTGACAATGGTGTGTGCCCAGGTCATTGGAAACCATGTTGCAGTTACAGTGGGTGGATCAAATGGTCATTTTGAGCTTAATGTGTTCAAGCCAATGATTGCCAGTTGTCTCCTGCATTCGCTGAGACTGCTTGGAGATTCATCTGCTTCCTTTGAAAAGAATTGTGTGAGAGGCATTCAAGCTAATAGGGAAAGAATTTCAAAATTACTGCATGAGTCACTGATGCTCGTCACATCCTTAAACCCAAAAATTGGTTATGACAAGGCAGCAGCAGTTGCCAAGACAGCCCACAAAGAGGGGTGTACTCTTAAGGTGATGATGCCATGTTATACTTGTTTTTCCGTTTGTCTTGCTTATTTTGACCTCTTTCTGAATATTAAATAAAAAATCATGTTTGACATGCATTAATTCTTAACAAATTAAGTTCTTTATGTAAGT

Coding sequences of Glyma10g02040

Limit To All Plant Sequences

>Glyma10g02040.3   sequence type=CDS   gene model=Glyma10g02040   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAAAAAAGTCATAGTTGTGGCCCATTTAAATGCTTTTCATGGACACGAACAAAAGTCATAGTTCGGCTCCAACTTGGAAGAAGACTGCGCAATCGCGTGTCCTTATTGGGTACATACTTTGGCAGTATTGTATTGGTGATTGGTCAGACTAGTGTTATTCTCCGGTGGCTCCTTCCTTCCTTCGCCATGGCGTTCTACGTGCTCTCGCGTCGTTTATCAGCTGGATCCAACTCAACGACGCTCCTCGCCCTGCGTTTTGCTTCCTCTTCCAGATCCTTCTCCTCTTCCTTCAGGGAAGAAAGAGATACCTTTGGACCCATTCAAGTTCCCTCCGACAAATTATGGGGAGCACAAACTCAAAGATCGTTGCAGAACTTCGACATCGGTGGGCCCCGCGAACGCATGCCCGAACCCATCATTCGCGCTTTTGGCGTCTTGAAGAAATGCGCTGCTAAGGTGAACATGGAGTATGGTCTTGATCCCATCGTGGGAGAAGCAATAATGCAAGCGGCACAAGAAGTAGCCGAGGGAAAACTAAACGAACATTTTCCTCTCGTTGTATGGCAAACTGGCAGTGGCACTCAAAGTAACATGAATGCTAACGAGGTTATTGCAAACCGAGCAGCAGAGATTCTTGGCCATAAGCGCGGTGGGAAGTTCGTGCACCCAAATGACCATGTCAATAGATCGCAGTCTTCTAATGATACATTCCCAACCGTAATGCACATTGCAGCCACAATGGAAATAAACTCAAGACTAATTCCCAGCTTGAAAACCTTACACGGTACACTAAACTCAAAGTCAATTGAATTCAAAGATATTGTCAAGATTGGACGCACTCATACTCAAGATGCAACACCTTTGACTCTTGGGCAAGAGTTTAGTGGGTATACTACACAAGTGAAGTACGGTATTGATCGAGTAATTGGCACTTTGCCGCACCTGTATCAGCTTGCCCAGGGTGGTACAGCTGTAGGGACTGGATTGAATACAAAGAAGGGGTTTGATGCCAAGATAGCAGCAGCAGTAGCTGAGGAAACAAATCTGCCTTTTGTTACGGCAGAAAATAAGTTTGAGGCCTTGGCTGCCCATGATGCTTTTGTTGAAACTAGTGGAGCACTTAACACTATTGCGGCTTCTTTGATGAAGATTGCTAATGATATACGGTTGTTAGGAAGTGGTCCACGCTGCGGTCTTGGTGAACTCATTCTTCCTGAAAACGAACCAGGAAGTAGTATCATGCCTGGGAAGGTTAACCCTACCCAGTGTGAGGCTTTGACAATGGTGTGTGCCCAGGTCATTGGAAACCATGTTGCAGTTACAGTGGGTGGATCAAATGGTCATTTTGAGCTTAATGTGTTCAAGCCAATGATTGCCAGTTGTCTCCTGCATTCGCTGAGACTGCTTGGAGATTCATCTGCTTCCTTTGAAAAGAATTGTGTGAGAGGCATTCAAGCTAATAGGGAAAGAATTTCAAAATTACTGCATGAGTCACTGATGCTCGTCACATCCTTAAACCCAAAAATTGGTTATGACAAGGCAGCAGCAGTTGCCAAGACAGCCCACAAAGAGGGGTGTACTCTTAAGGAAGCTGCATTGAAACTCGGAGTGCTCAGCTCTGAAGATTTTGACAAGCTTGTGGTACCTGAGAAAATGCTTGGACCGTCTGATTGA

>Glyma10g02040.4   sequence type=CDS   gene model=Glyma10g02040   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAAAAAAGTCATAGTTGTGGCCCATTTAAATGCTTTTCATGGACACGAACAAAAGTCATAGTTCGGCTCCAACTTGGAAGAAGACTGCGCAATCGCGTGTCCTTATTGGGTACATACTTTGGCAGTATTGTATTGGTGATTGGTCAGACTAGTGTTATTCTCCGGTGGCTCCTTCCTTCCTTCGCCATGGCGTTCTACGTGCTCTCGCGTCGTTTATCAGCTGGATCCAACTCAACGACGCTCCTCGCCCTGCGTTTTGCTTCCTCTTCCAGATCCTTCTCCTCTTCCTTCAGGGAAGAAAGAGATACCTTTGGACCCATTCAAGTTCCCTCCGACAAATTATGGGGAGCACAAACTCAAAGATCGTTGCAGAACTTCGACATCGGTGGGCCCCGCGAACGCATGCCCGAACCCATCATTCGCGCTTTTGGCGTCTTGAAGAAATGCGCTGCTAAGGTGAACATGGAGTATGGTCTTGATCCCATCGTGGGAGAAGCAATAATGCAAGCGGCACAAGAAGTAGCCGAGGGAAAACTAAACGAACATTTTCCTCTCGTTGTATGGCAAACTGGCAGTGGCACTCAAAGTAACATGAATGCTAACGAGGTTATTGCAAACCGAGCAGCAGAGATTCTTGGCCATAAGCGCGGTGGGAAGTTCGTGCACCCAAATGACCATGTCAATAGATCGCAGTCTTCTAATGATACATTCCCAACCGTAATGCACATTGCAGCCACAATGGAAATAAACTCAAGACTAATTCCCAGCTTGAAAACCTTACACGGTACACTAAACTCAAAGTCAATTGAATTCAAAGATATTGTCAAGATTGGACGCACTCATACTCAAGATGCAACACCTTTGACTCTTGGGCAAGAGTTTAGTGGGTATACTACACAAGTGAAGTACGGTATTGATCGAGTAATTGGCACTTTGCCGCACCTGTATCAGCTTGCCCAGGGTGGTACAGCTGTAGGGACTGGATTGAATACAAAGAAGGGGTTTGATGCCAAGATAGCAGCAGCAGTAGCTGAGGAAACAAATCTGCCTTTTGTTACGGCAGAAAATAAGTTTGAGGCCTTGGCTGCCCATGATGCTTTTGTTGAAACTAGTGGAGCACTTAACACTATTGCGGCTTCTTTGATGAAGATTGCTAATGATATACGGTTGTTAGGAAGTGGTCCACGCTGCGGTCTTGGTGAACTCATTCTTCCTGAAAACGAACCAGGAAGTAGTATCATGCCTGGGAAGGTTAACCCTACCCAGTGTGAGGCTTTGACAATGGTGTGTGCCCAGGTCATTGGAAACCATGTTGCAGTTACAGTGGGTGGATCAAATGGTCATTTTGAGCTTAATGTGTTCAAGCCAATGATTGCCAGTTGTCTCCTGCATTCGCTGAGACTGCTTGGAGATTCATCTGCTTCCTTTGAAAAGAATTGTGTGAGAGGCATTCAAGCTAATAGGGAAAGAATTTCAAAATTACTGCATGAGTCACTGATGCTCGTCACATCCTTAAACCCAAAAATTGGTTATGACAAGGCAGCAGCAGTTGCCAAGACAGCCCACAAAGAGGGGTGTACTCTTAAGGTGATGATGCCATGTTATACTTGTTTTTCCGTTTGTCTTGCTTATTTTGACCTCTTTCTGAATATTAAATAA

Predicted protein sequences of Glyma10g02040

Limit To All Plant Sequences

>Glyma10g02040.3   sequence type=predicted peptide   gene model=Glyma10g02040   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKKSHSCGPFKCFSWTRTKVIVRLQLGRRLRNRVSLLGTYFGSIVLVIGQTSVILRWLLPSFAMAFYVLSRRLSAGSNSTTLLALRFASSSRSFSSSFREERDTFGPIQVPSDKLWGAQTQRSLQNFDIGGPRERMPEPIIRAFGVLKKCAAKVNMEYGLDPIVGEAIMQAAQEVAEGKLNEHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGGKFVHPNDHVNRSQSSNDTFPTVMHIAATMEINSRLIPSLKTLHGTLNSKSIEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVIGTLPHLYQLAQGGTAVGTGLNTKKGFDAKIAAAVAEETNLPFVTAENKFEALAAHDAFVETSGALNTIAASLMKIANDIRLLGSGPRCGLGELILPENEPGSSIMPGKVNPTQCEALTMVCAQVIGNHVAVTVGGSNGHFELNVFKPMIASCLLHSLRLLGDSSASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDKAAAVAKTAHKEGCTLKEAALKLGVLSSEDFDKLVVPEKMLGPSD*

>Glyma10g02040.4   sequence type=predicted peptide   gene model=Glyma10g02040   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKKSHSCGPFKCFSWTRTKVIVRLQLGRRLRNRVSLLGTYFGSIVLVIGQTSVILRWLLPSFAMAFYVLSRRLSAGSNSTTLLALRFASSSRSFSSSFREERDTFGPIQVPSDKLWGAQTQRSLQNFDIGGPRERMPEPIIRAFGVLKKCAAKVNMEYGLDPIVGEAIMQAAQEVAEGKLNEHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGGKFVHPNDHVNRSQSSNDTFPTVMHIAATMEINSRLIPSLKTLHGTLNSKSIEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVIGTLPHLYQLAQGGTAVGTGLNTKKGFDAKIAAAVAEETNLPFVTAENKFEALAAHDAFVETSGALNTIAASLMKIANDIRLLGSGPRCGLGELILPENEPGSSIMPGKVNPTQCEALTMVCAQVIGNHVAVTVGGSNGHFELNVFKPMIASCLLHSLRLLGDSSASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDKAAAVAKTAHKEGCTLKVMMPCYTCFSVCLAYFDLFLNIK*

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