Glyma10g02030 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma10g02030

Feature Type:	gene_model
Chromosome:	Gm10
Start:	1444169
stop:	1448790
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma10g02030

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G16850	AT	Annotation by Michelle Graham. TAIR10: Pectin lyase-like superfamily protein \| chr3:5748692-5750981 FORWARD LENGTH=455	SoyBase	E_val: 0	ISS
GO:0005975	GO-bp	Annotation by Michelle Graham. GO Biological Process: carbohydrate metabolic process	SoyBase	N/A	ISS
GO:0006816	GO-bp	Annotation by Michelle Graham. GO Biological Process: calcium ion transport	SoyBase	N/A	ISS
GO:0007030	GO-bp	Annotation by Michelle Graham. GO Biological Process: Golgi organization	SoyBase	N/A	ISS
GO:0009637	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to blue light	SoyBase	N/A	ISS
GO:0009651	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to salt stress	SoyBase	N/A	ISS
GO:0010155	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of proton transport	SoyBase	N/A	ISS
GO:0046777	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein autophosphorylation	SoyBase	N/A	ISS
GO:0048767	GO-bp	Annotation by Michelle Graham. GO Biological Process: root hair elongation	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0005773	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: vacuole	SoyBase	N/A	ISS
GO:0009505	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plant-type cell wall	SoyBase	N/A	ISS
GO:0004650	GO-mf	Annotation by Michelle Graham. GO Molecular Function: polygalacturonase activity	SoyBase	N/A	ISS
PF00295	PFAM	Glycosyl hydrolases family 28	JGI		ISS
UniRef100_B9RTB3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Polygalacturonase, putative n=1 Tax=Ricinus communis RepID=B9RTB3_RICCO	SoyBase	E_val: 0	ISS
UniRef100_I1L7S8	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1L7S8_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma10g02030

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma10g02030

Paralog	Evidence	Comments
Glyma02g01910	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma10g02030 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.10g016100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma10g02030

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma10g02030

Limit To All Plant Sequences

>Glyma10g02030.2   sequence type=transcript   gene model=Glyma10g02030   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CTGGCATTTTCCTTTATAGCCGTCGCTTTCTACTACCTCTCCCCGTTTGTTTTATTGTTTCTAGTACTTGGTTGGCATTATATACGAAATAGCACTTGCTCTCTTCCACTTCTTGTTCTGTCCTTATGTTCTTGTTCTAGTTCTTCTACCCTCTTCTTCACTCTTGTTCCATCACTGCTTTCAGAGCTTGCTATTTCTCTTTGAAGAAGAGGGGCACAGACCCATGAAGAGTCTCGTAAGTAGCTGTGCTTTTAGTTATAGTATTAAGCACTGCTCTGGAAAGCAATGGAGAAGATGATCATGAACGATGTAAACAGGAAGCAGTGGATCCTAGGCCTCACAGCGTGTCAATCTTAGAGTTCGGAGCAGTTGGAGACGGGAAAACGCTGAACACAGTTGCATTCCAAAATGCAGTTTTTTATGCCAAGTCATTTGCTGACAAAGGTGGGGCTAAACTATATGTTCCATCTGGCAAGTGGCTTACTGGAAGTTTTAACCTTACCAGCCACCTCACTCTCTTCCTTGAGCGAGGCGCAACCATCATTGCATCACAGGATTATGCACACTGGACTGCAATGGACCCCCTACCCTCCTATGGTCGAGGAATTGATGTTCCTAGTGGGAGATATCGCAGTTTAATTTATGGACAGAACTTAAGTGATGTGGTGATTACAGGTGATAATGCAATTATTGATGGGCAGGGTTCTGTCTGGTGGGACCTAATCGGTACTCATTCCTTAAATTACAGCAGACCACATATTATAGAACTTGTTGGTTCTGATAATATCACAATCTCAAATTTGACATTTTTAAACTCTCCTGCCTGGAGCATCCATCCAGTATATTGCAGTAACGTTCAAATCCAGAAGATAACAGTTCATGCACCAACTGAGTTCCCTTACACAAGCGGTATAGTTCCAGATTCTTCTGAGCATGTTTGCATTTACAACAGCAATATTAGCACTGGTCATGATGCAATTGTGCTGAAGAGTGGTTGGGATCAATATGGAGTTGCCTATGGCAAACCAACCTCAAAGGTCCACATCCGGGGTGTTTATCTACAATCTTCATCTGGCGCTGGCCTAGCATTTGGGAGTGAGATGTCTGGAGGCATATCTGATATAATTGCAGAGCAGCTCCATATTACCAACTCAACTATTGGCATTGAACTGAAGACAACTAAGGGTAGAGGTGGTTATATGAAAAACATCTTCATTTCTGACGCAAAATTGGAAAATATTTACTTGGGTATCAGCATGACGGGAAGCTCTGGCTCCCATCCAGATGACAAGTACGATCCTAATGCAGTTCCGGATGTTGGTAATGTTACTTTTGAGAATGTGATTGGTACAAATATTGCTATTGCTGGGAATTTTTCAGGAATAGTTGATTCGCCTTTCACTCCTATCTGTCTTTTGAACGCGACCTTTTCTTCCAGTTCTGAGTCATCATCTCCTTCATGGTTTTGTTCTGACATAATGGGAATCTCCGAGGAAGTGTTTCCTGAGCCATGTCCTGATCTGCAGAACACGTATTCAAACTTTTCCTCTTGCTTTTCTTCCCTACATCCGTCGTCTAGTTATGTCTCAAGCGCATGAGATCGCCATCTCTAAGAATCTAGTCATTTCTTTGATTCAACCTGTACATGAGACACAAAATTCATATTCCATCAGGAACTTCATTACAATTTTCCAATAAAAGGAAATTCTTGATGTAAAGATGTTCTTTCTCTTCAACATTTCAATGAACCTTCCTCTTGTCTGTGCATGAAAAGTCCGTCTCTGAATAGTATATTTTATGTACAGCCTCAATTTCTTCATTCATGTAAAAGAAATTTTTGATGTTGGTGTACAGCCTAAAGACATTATTTGCTTTCAACTTACCATGTATAATATGGAGTGCTACATTGATTTGTTGTCCATGGCTGGGCTTTGTGAGGGTGTGTGGTGTGGTGTGCAGCTTTTGACAAAATTACGGTTTTCTTTGCATAGTTCTCTTTATGTTATACCTCTGGATTAATCTAGACTACCTTTGCTCGTTGTTTCTTGACATTACATTTTGTTTTTTGGATTGATAAAATTTAGAGGAAGGGGATGGTGCCCCAATACAAGATAAGGAAAGCCTTTGGGCTTAAAGTGTGCTTAATTGGGTTTGAATCGTTTTGTTGTCATGACATGACAAGTACTACCAATCTTTAACTAATTAAGGTAGGAGCCATGGGAGTGCTGCATGGTCTAAAGTTGAAAGATTGCTGTCCTAATGTCGGGGTAGTGTTTTGGATTCATCTCAAGCATTTTGTAATTGCTAGACAGAGCTACATGGTGACAGTGGTAAAGGCTATTTCCTTGTCACCACTAAGTCCATCAATGGTAGTTAATTGTACCACTCTTACCCATCTTGGGAACCTATAACAACTCGTGTCAACTTTCTTATGAAAGTACCGGGATTGGATCGAGCGGAAGGAGTTAGTCTTTTACAGCGTGGTGAACCAAGGTTTGAAACCCTATTGAAAGGGGTTTATATTTAGTGTTTGATGGTGCTCAAAGAGGATTTGGAGACTGGGAAACAAAAAAACTTTCTTATGGAAGTAGCACTAAACTGGCATATGACATGCAAAACATGGTGATCATTATCATCAAATCTACGGGTGACACTTTCCATCAATTAGTGTAATGGTAC

Coding sequences of Glyma10g02030

Limit To All Plant Sequences

>Glyma10g02030.1   sequence type=CDS   gene model=Glyma10g02030   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAGAGTCTCGTAGCTGTGCTTTTAGTTATAGTATTAAGCACTGCTCTGGAAAGCAATGGAGAAGATGATCATGAACGATGTAAACAGGAAGCAGTGGATCCTAGGCCTCACAGCGTGTCAATCTTAGAGTTCGGAGCAGTTGGAGACGGGAAAACGCTGAACACAGTTGCATTCCAAAATGCAGTTTTTTATGCCAAGTCATTTGCTGACAAAGGTGGGGCTAAACTATATGTTCCATCTGGCAAGTGGCTTACTGGAAGTTTTAACCTTACCAGCCACCTCACTCTCTTCCTTGAGCGAGGCGCAACCATCATTGCATCACAGGATTATGCACACTGGACTGCAATGGACCCCCTACCCTCCTATGGTCGAGGAATTGATGTTCCTAGTGGGAGATATCGCAGTTTAATTTATGGACAGAACTTAAGTGATGTGGTGATTACAGGTGATAATGCAATTATTGATGGGCAGGGTTCTGTCTGGTGGGACCTAATCGGTACTCATTCCTTAAATTACAGCAGACCACATATTATAGAACTTGTTGGTTCTGATAATATCACAATCTCAAATTTGACATTTTTAAACTCTCCTGCCTGGAGCATCCATCCAGTATATTGCAGTAACGTTCAAATCCAGAAGATAACAGTTCATGCACCAACTGAGTTCCCTTACACAAGCGGTATAGTTCCAGATTCTTCTGAGCATGTTTGCATTTACAACAGCAATATTAGCACTGGTCATGATGCAATTGTGCTGAAGAGTGGTTGGGATCAATATGGAGTTGCCTATGGCAAACCAACCTCAAAGGTCCACATCCGGGGTGTTTATCTACAATCTTCATCTGGCGCTGGCCTAGCATTTGGGAGTGAGATGTCTGGAGGCATATCTGATATAATTGCAGAGCAGCTCCATATTACCAACTCAACTATTGGCATTGAACTGAAGACAACTAAGGGTAGAGGTGGTTATATGAAAAACATCTTCATTTCTGACGCAAAATTGGAAAATATTTACTTGGGTATCAGCATGACGGGAAGCTCTGGCTCCCATCCAGATGACAAGTACGATCCTAATGCAGTTCCGGATGTTGGTAATGTTACTTTTGAGAATGTGATTGGTACAAATATTGCTATTGCTGGGAATTTTTCAGGAATAGTTGATTCGCCTTTCACTCCTATCTGTCTTTTGAACGCGACCTTTTCTTCCAGTTCTGAGTCATCATCTCCTTCATGGTTTTGTTCTGACATAATGGGAATCTCCGAGGAAGTGTTTCCTGAGCCATGTCCTGATCTGCAGAACACGTATTCAAACTTTTCCTCTTGCTTTTCTTCCCTACATCCGTCGTCTAGTTATGTCTCAAGCGCATGA

>Glyma10g02030.2   sequence type=CDS   gene model=Glyma10g02030   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGACCCCCTACCCTCCTATGGTCGAGGAATTGATGTTCCTAGTGGGAGATATCGCAGTTTAATTTATGGACAGAACTTAAGTGATGTGGTGATTACAGGTGATAATGCAATTATTGATGGGCAGGGTTCTGTCTGGTGGGACCTAATCGGTACTCATTCCTTAAATTACAGCAGACCACATATTATAGAACTTGTTGGTTCTGATAATATCACAATCTCAAATTTGACATTTTTAAACTCTCCTGCCTGGAGCATCCATCCAGTATATTGCAGTAACGTTCAAATCCAGAAGATAACAGTTCATGCACCAACTGAGTTCCCTTACACAAGCGGTATAGTTCCAGATTCTTCTGAGCATGTTTGCATTTACAACAGCAATATTAGCACTGGTCATGATGCAATTGTGCTGAAGAGTGGTTGGGATCAATATGGAGTTGCCTATGGCAAACCAACCTCAAAGGTCCACATCCGGGGTGTTTATCTACAATCTTCATCTGGCGCTGGCCTAGCATTTGGGAGTGAGATGTCTGGAGGCATATCTGATATAATTGCAGAGCAGCTCCATATTACCAACTCAACTATTGGCATTGAACTGAAGACAACTAAGGGTAGAGGTGGTTATATGAAAAACATCTTCATTTCTGACGCAAAATTGGAAAATATTTACTTGGGTATCAGCATGACGGGAAGCTCTGGCTCCCATCCAGATGACAAGTACGATCCTAATGCAGTTCCGGATGTTGGTAATGTTACTTTTGAGAATGTGATTGGTACAAATATTGCTATTGCTGGGAATTTTTCAGGAATAGTTGATTCGCCTTTCACTCCTATCTGTCTTTTGAACGCGACCTTTTCTTCCAGTTCTGAGTCATCATCTCCTTCATGGTTTTGTTCTGACATAATGGGAATCTCCGAGGAAGTGTTTCCTGAGCCATGTCCTGATCTGCAGAACACGTATTCAAACTTTTCCTCTTGCTTTTCTTCCCTACATCCGTCGTCTAGTTATGTCTCAAGCGCATGA

Predicted protein sequences of Glyma10g02030

Limit To All Plant Sequences

>Glyma10g02030.1   sequence type=predicted peptide   gene model=Glyma10g02030   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKSLVAVLLVIVLSTALESNGEDDHERCKQEAVDPRPHSVSILEFGAVGDGKTLNTVAFQNAVFYAKSFADKGGAKLYVPSGKWLTGSFNLTSHLTLFLERGATIIASQDYAHWTAMDPLPSYGRGIDVPSGRYRSLIYGQNLSDVVITGDNAIIDGQGSVWWDLIGTHSLNYSRPHIIELVGSDNITISNLTFLNSPAWSIHPVYCSNVQIQKITVHAPTEFPYTSGIVPDSSEHVCIYNSNISTGHDAIVLKSGWDQYGVAYGKPTSKVHIRGVYLQSSSGAGLAFGSEMSGGISDIIAEQLHITNSTIGIELKTTKGRGGYMKNIFISDAKLENIYLGISMTGSSGSHPDDKYDPNAVPDVGNVTFENVIGTNIAIAGNFSGIVDSPFTPICLLNATFSSSSESSSPSWFCSDIMGISEEVFPEPCPDLQNTYSNFSSCFSSLHPSSSYVSSA*

>Glyma10g02030.2   sequence type=predicted peptide   gene model=Glyma10g02030   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDPLPSYGRGIDVPSGRYRSLIYGQNLSDVVITGDNAIIDGQGSVWWDLIGTHSLNYSRPHIIELVGSDNITISNLTFLNSPAWSIHPVYCSNVQIQKITVHAPTEFPYTSGIVPDSSEHVCIYNSNISTGHDAIVLKSGWDQYGVAYGKPTSKVHIRGVYLQSSSGAGLAFGSEMSGGISDIIAEQLHITNSTIGIELKTTKGRGGYMKNIFISDAKLENIYLGISMTGSSGSHPDDKYDPNAVPDVGNVTFENVIGTNIAIAGNFSGIVDSPFTPICLLNATFSSSSESSSPSWFCSDIMGISEEVFPEPCPDLQNTYSNFSSCFSSLHPSSSYVSSA*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain