Report for Sequence Feature Glyma10g02030
Feature Type: gene_model
Chromosome: Gm10
Start: 1444169
stop: 1448790
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma10g02030
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT3G16850 AT
Annotation by Michelle Graham. TAIR10: Pectin lyase-like superfamily protein | chr3:5748692-5750981 FORWARD LENGTH=455
SoyBase E_val: 0 ISS
GO:0005975 GO-bp
Annotation by Michelle Graham. GO Biological Process: carbohydrate metabolic process
SoyBase N/A ISS
GO:0006816 GO-bp
Annotation by Michelle Graham. GO Biological Process: calcium ion transport
SoyBase N/A ISS
GO:0007030 GO-bp
Annotation by Michelle Graham. GO Biological Process: Golgi organization
SoyBase N/A ISS
GO:0009637 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to blue light
SoyBase N/A ISS
GO:0009651 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to salt stress
SoyBase N/A ISS
GO:0010155 GO-bp
Annotation by Michelle Graham. GO Biological Process: regulation of proton transport
SoyBase N/A ISS
GO:0046777 GO-bp
Annotation by Michelle Graham. GO Biological Process: protein autophosphorylation
SoyBase N/A ISS
GO:0048767 GO-bp
Annotation by Michelle Graham. GO Biological Process: root hair elongation
SoyBase N/A ISS
GO:0005576 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: extracellular region
SoyBase N/A ISS
GO:0005773 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: vacuole
SoyBase N/A ISS
GO:0009505 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: plant-type cell wall
SoyBase N/A ISS
GO:0004650 GO-mf
Annotation by Michelle Graham. GO Molecular Function: polygalacturonase activity
SoyBase N/A ISS
PF00295 PFAM
Glycosyl hydrolases family 28
JGI ISS
UniRef100_B9RTB3 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Polygalacturonase, putative n=1 Tax=Ricinus communis RepID=B9RTB3_RICCO
SoyBase E_val: 0 ISS
UniRef100_I1L7S8 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1L7S8_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma10g02030
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma10g02030
Paralog Evidence Comments
Glyma02g01910 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma10g02030 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.10g016100 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma10g02030
Transcripts of Glyma10g02030
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma10g02030.2 sequence type=transcript gene model=Glyma10g02030 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
CTGGCATTTTCCTTTATAGCCGTCGCTTTCTACTACCTCTCCCCGTTTGTTTTATTGTTTCTAGTACTTGGTTGGCATTATATACGAAATAGCACTTGCTCTCTTCCACTTCTTGTTCTGTCCTTATGTTCTTGTTCTAGTTCTTCTACCCTCTTCTTCACTCTTGTTCCATCACTGCTTTCAGAGCTTGCTATTTCTCTTTGAAGAAGAGGGGCACAGACCCATGAAGAGTCTCGTAAGTAGCTGTGCTTTTAGTTATAGTATTAAGCACTGCTCTGGAAAGCAATGGAGAAGATGATCATGAACGATGTAAACAGGAAGCAGTGGATCCTAGGCCTCACAGCGTGTCAATCTTAGAGTTCGGAGCAGTTGGAGACGGGAAAACGCTGAACACAGTTGCATTCCAAAATGCAGTTTTTTATGCCAAGTCATTTGCTGACAAAGGTGGGGCTAAACTATATGTTCCATCTGGCAAGTGGCTTACTGGAAGTTTTAACCTTACCAGCCACCTCACTCTCTTCCTTGAGCGAGGCGCAACCATCATTGCATCACAGGATTATGCACACTGGACTGCAATGGACCCCCTACCCTCCTATGGTCGAGGAATTGATGTTCCTAGTGGGAGATATCGCAGTTTAATTTATGGACAGAACTTAAGTGATGTGGTGATTACAGGTGATAATGCAATTATTGATGGGCAGGGTTCTGTCTGGTGGGACCTAATCGGTACTCATTCCTTAAATTACAGCAGACCACATATTATAGAACTTGTTGGTTCTGATAATATCACAATCTCAAATTTGACATTTTTAAACTCTCCTGCCTGGAGCATCCATCCAGTATATTGCAGTAACGTTCAAATCCAGAAGATAACAGTTCATGCACCAACTGAGTTCCCTTACACAAGCGGTATAGTTCCAGATTCTTCTGAGCATGTTTGCATTTACAACAGCAATATTAGCACTGGTCATGATGCAATTGTGCTGAAGAGTGGTTGGGATCAATATGGAGTTGCCTATGGCAAACCAACCTCAAAGGTCCACATCCGGGGTGTTTATCTACAATCTTCATCTGGCGCTGGCCTAGCATTTGGGAGTGAGATGTCTGGAGGCATATCTGATATAATTGCAGAGCAGCTCCATATTACCAACTCAACTATTGGCATTGAACTGAAGACAACTAAGGGTAGAGGTGGTTATATGAAAAACATCTTCATTTCTGACGCAAAATTGGAAAATATTTACTTGGGTATCAGCATGACGGGAAGCTCTGGCTCCCATCCAGATGACAAGTACGATCCTAATGCAGTTCCGGATGTTGGTAATGTTACTTTTGAGAATGTGATTGGTACAAATATTGCTATTGCTGGGAATTTTTCAGGAATAGTTGATTCGCCTTTCACTCCTATCTGTCTTTTGAACGCGACCTTTTCTTCCAGTTCTGAGTCATCATCTCCTTCATGGTTTTGTTCTGACATAATGGGAATCTCCGAGGAAGTGTTTCCTGAGCCATGTCCTGATCTGCAGAACACGTATTCAAACTTTTCCTCTTGCTTTTCTTCCCTACATCCGTCGTCTAGTTATGTCTCAAGCGCATGAGATCGCCATCTCTAAGAATCTAGTCATTTCTTTGATTCAACCTGTACATGAGACACAAAATTCATATTCCATCAGGAACTTCATTACAATTTTCCAATAAAAGGAAATTCTTGATGTAAAGATGTTCTTTCTCTTCAACATTTCAATGAACCTTCCTCTTGTCTGTGCATGAAAAGTCCGTCTCTGAATAGTATATTTTATGTACAGCCTCAATTTCTTCATTCATGTAAAAGAAATTTTTGATGTTGGTGTACAGCCTAAAGACATTATTTGCTTTCAACTTACCATGTATAATATGGAGTGCTACATTGATTTGTTGTCCATGGCTGGGCTTTGTGAGGGTGTGTGGTGTGGTGTGCAGCTTTTGACAAAATTACGGTTTTCTTTGCATAGTTCTCTTTATGTTATACCTCTGGATTAATCTAGACTACCTTTGCTCGTTGTTTCTTGACATTACATTTTGTTTTTTGGATTGATAAAATTTAGAGGAAGGGGATGGTGCCCCAATACAAGATAAGGAAAGCCTTTGGGCTTAAAGTGTGCTTAATTGGGTTTGAATCGTTTTGTTGTCATGACATGACAAGTACTACCAATCTTTAACTAATTAAGGTAGGAGCCATGGGAGTGCTGCATGGTCTAAAGTTGAAAGATTGCTGTCCTAATGTCGGGGTAGTGTTTTGGATTCATCTCAAGCATTTTGTAATTGCTAGACAGAGCTACATGGTGACAGTGGTAAAGGCTATTTCCTTGTCACCACTAAGTCCATCAATGGTAGTTAATTGTACCACTCTTACCCATCTTGGGAACCTATAACAACTCGTGTCAACTTTCTTATGAAAGTACCGGGATTGGATCGAGCGGAAGGAGTTAGTCTTTTACAGCGTGGTGAACCAAGGTTTGAAACCCTATTGAAAGGGGTTTATATTTAGTGTTTGATGGTGCTCAAAGAGGATTTGGAGACTGGGAAACAAAAAAACTTTCTTATGGAAGTAGCACTAAACTGGCATATGACATGCAAAACATGGTGATCATTATCATCAAATCTACGGGTGACACTTTCCATCAATTAGTGTAATGGTAC
Coding sequences of Glyma10g02030
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma10g02030.1 sequence type=CDS gene model=Glyma10g02030 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGAAGAGTCTCGTAGCTGTGCTTTTAGTTATAGTATTAAGCACTGCTCTGGAAAGCAATGGAGAAGATGATCATGAACGATGTAAACAGGAAGCAGTGGATCCTAGGCCTCACAGCGTGTCAATCTTAGAGTTCGGAGCAGTTGGAGACGGGAAAACGCTGAACACAGTTGCATTCCAAAATGCAGTTTTTTATGCCAAGTCATTTGCTGACAAAGGTGGGGCTAAACTATATGTTCCATCTGGCAAGTGGCTTACTGGAAGTTTTAACCTTACCAGCCACCTCACTCTCTTCCTTGAGCGAGGCGCAACCATCATTGCATCACAGGATTATGCACACTGGACTGCAATGGACCCCCTACCCTCCTATGGTCGAGGAATTGATGTTCCTAGTGGGAGATATCGCAGTTTAATTTATGGACAGAACTTAAGTGATGTGGTGATTACAGGTGATAATGCAATTATTGATGGGCAGGGTTCTGTCTGGTGGGACCTAATCGGTACTCATTCCTTAAATTACAGCAGACCACATATTATAGAACTTGTTGGTTCTGATAATATCACAATCTCAAATTTGACATTTTTAAACTCTCCTGCCTGGAGCATCCATCCAGTATATTGCAGTAACGTTCAAATCCAGAAGATAACAGTTCATGCACCAACTGAGTTCCCTTACACAAGCGGTATAGTTCCAGATTCTTCTGAGCATGTTTGCATTTACAACAGCAATATTAGCACTGGTCATGATGCAATTGTGCTGAAGAGTGGTTGGGATCAATATGGAGTTGCCTATGGCAAACCAACCTCAAAGGTCCACATCCGGGGTGTTTATCTACAATCTTCATCTGGCGCTGGCCTAGCATTTGGGAGTGAGATGTCTGGAGGCATATCTGATATAATTGCAGAGCAGCTCCATATTACCAACTCAACTATTGGCATTGAACTGAAGACAACTAAGGGTAGAGGTGGTTATATGAAAAACATCTTCATTTCTGACGCAAAATTGGAAAATATTTACTTGGGTATCAGCATGACGGGAAGCTCTGGCTCCCATCCAGATGACAAGTACGATCCTAATGCAGTTCCGGATGTTGGTAATGTTACTTTTGAGAATGTGATTGGTACAAATATTGCTATTGCTGGGAATTTTTCAGGAATAGTTGATTCGCCTTTCACTCCTATCTGTCTTTTGAACGCGACCTTTTCTTCCAGTTCTGAGTCATCATCTCCTTCATGGTTTTGTTCTGACATAATGGGAATCTCCGAGGAAGTGTTTCCTGAGCCATGTCCTGATCTGCAGAACACGTATTCAAACTTTTCCTCTTGCTTTTCTTCCCTACATCCGTCGTCTAGTTATGTCTCAAGCGCATGA
>Glyma10g02030.2 sequence type=CDS gene model=Glyma10g02030 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGACCCCCTACCCTCCTATGGTCGAGGAATTGATGTTCCTAGTGGGAGATATCGCAGTTTAATTTATGGACAGAACTTAAGTGATGTGGTGATTACAGGTGATAATGCAATTATTGATGGGCAGGGTTCTGTCTGGTGGGACCTAATCGGTACTCATTCCTTAAATTACAGCAGACCACATATTATAGAACTTGTTGGTTCTGATAATATCACAATCTCAAATTTGACATTTTTAAACTCTCCTGCCTGGAGCATCCATCCAGTATATTGCAGTAACGTTCAAATCCAGAAGATAACAGTTCATGCACCAACTGAGTTCCCTTACACAAGCGGTATAGTTCCAGATTCTTCTGAGCATGTTTGCATTTACAACAGCAATATTAGCACTGGTCATGATGCAATTGTGCTGAAGAGTGGTTGGGATCAATATGGAGTTGCCTATGGCAAACCAACCTCAAAGGTCCACATCCGGGGTGTTTATCTACAATCTTCATCTGGCGCTGGCCTAGCATTTGGGAGTGAGATGTCTGGAGGCATATCTGATATAATTGCAGAGCAGCTCCATATTACCAACTCAACTATTGGCATTGAACTGAAGACAACTAAGGGTAGAGGTGGTTATATGAAAAACATCTTCATTTCTGACGCAAAATTGGAAAATATTTACTTGGGTATCAGCATGACGGGAAGCTCTGGCTCCCATCCAGATGACAAGTACGATCCTAATGCAGTTCCGGATGTTGGTAATGTTACTTTTGAGAATGTGATTGGTACAAATATTGCTATTGCTGGGAATTTTTCAGGAATAGTTGATTCGCCTTTCACTCCTATCTGTCTTTTGAACGCGACCTTTTCTTCCAGTTCTGAGTCATCATCTCCTTCATGGTTTTGTTCTGACATAATGGGAATCTCCGAGGAAGTGTTTCCTGAGCCATGTCCTGATCTGCAGAACACGTATTCAAACTTTTCCTCTTGCTTTTCTTCCCTACATCCGTCGTCTAGTTATGTCTCAAGCGCATGA
Predicted protein sequences of Glyma10g02030
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma10g02030.1 sequence type=predicted peptide gene model=Glyma10g02030 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MKSLVAVLLVIVLSTALESNGEDDHERCKQEAVDPRPHSVSILEFGAVGDGKTLNTVAFQNAVFYAKSFADKGGAKLYVPSGKWLTGSFNLTSHLTLFLERGATIIASQDYAHWTAMDPLPSYGRGIDVPSGRYRSLIYGQNLSDVVITGDNAIIDGQGSVWWDLIGTHSLNYSRPHIIELVGSDNITISNLTFLNSPAWSIHPVYCSNVQIQKITVHAPTEFPYTSGIVPDSSEHVCIYNSNISTGHDAIVLKSGWDQYGVAYGKPTSKVHIRGVYLQSSSGAGLAFGSEMSGGISDIIAEQLHITNSTIGIELKTTKGRGGYMKNIFISDAKLENIYLGISMTGSSGSHPDDKYDPNAVPDVGNVTFENVIGTNIAIAGNFSGIVDSPFTPICLLNATFSSSSESSSPSWFCSDIMGISEEVFPEPCPDLQNTYSNFSSCFSSLHPSSSYVSSA*
>Glyma10g02030.2 sequence type=predicted peptide gene model=Glyma10g02030 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MDPLPSYGRGIDVPSGRYRSLIYGQNLSDVVITGDNAIIDGQGSVWWDLIGTHSLNYSRPHIIELVGSDNITISNLTFLNSPAWSIHPVYCSNVQIQKITVHAPTEFPYTSGIVPDSSEHVCIYNSNISTGHDAIVLKSGWDQYGVAYGKPTSKVHIRGVYLQSSSGAGLAFGSEMSGGISDIIAEQLHITNSTIGIELKTTKGRGGYMKNIFISDAKLENIYLGISMTGSSGSHPDDKYDPNAVPDVGNVTFENVIGTNIAIAGNFSGIVDSPFTPICLLNATFSSSSESSSPSWFCSDIMGISEEVFPEPCPDLQNTYSNFSSCFSSLHPSSSYVSSA*