Glyma10g01960 - SoyBase

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Report for Sequence Feature Glyma10g01960

Feature Type:	gene_model
Chromosome:	Gm10
Start:	1397021
stop:	1398794
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma10g01960

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G62660	AT	Annotation by Michelle Graham. TAIR10: galacturonosyltransferase-like 7 \| chr3:23173419-23174504 FORWARD LENGTH=361	SoyBase	E_val: 0	ISS
GO:0016051	GO-bp	Annotation by Michelle Graham. GO Biological Process: carbohydrate biosynthetic process	SoyBase	N/A	ISS
GO:0005794	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus	SoyBase	N/A	ISS
GO:0016757	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring glycosyl groups	SoyBase	N/A	ISS
GO:0016758	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring hexosyl groups	SoyBase	N/A	ISS
GO:0047262	GO-mf	Annotation by Michelle Graham. GO Molecular Function: polygalacturonate 4-alpha-galacturonosyltransferase activity	SoyBase	N/A	ISS
PTHR13778	Panther	GLYCOSYL TRANSFERASE-RELATED	JGI		ISS
PF01501	PFAM	Glycosyl transferase family 8	JGI		ISS
UniRef100_B9GSE6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Glycosyltransferase, CAZy family GT8 n=1 Tax=Populus trichocarpa RepID=B9GSE6_POPTR	SoyBase	E_val: 0	ISS
UniRef100_I1L7S6	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1L7S6_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma10g01960

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma10g01960

Paralog	Evidence	Comments
Glyma02g01880	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma10g01960 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.10g015900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma10g01960

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma10g01960

Limit To All Plant Sequences

>Glyma10g01960.1   sequence type=CDS   gene model=Glyma10g01960   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTGTGGCTCATGAGATTCTCGGGCTTCTTCTCCGCCGCAATGCTCGTCATTCTCCTCTCCCCTTCCCTTCAATCCTTCCACCCCGCCGAAGCCATCCGCTCCTCCCACCACCTCGACGGCCTCCTCCGCCTCCCTCCGCCTCGCCTTTCCTTCCGCCCCGCCCCTCGTTTCCGCAATGCCGCCGACGCCAACAAATGCGCCTCCTCCTCCGTCTCCACCTCCGTCTGCGACCCCTCCCTCGTCCACGTCGCCATCACCCTCGACGTCGAGTACCTCCGCGGCTCCATCGCCGCCGTCCACTCCATCCTCCAACACTCCCAGTGCCCGGAGAACATCTTCTTCCACTTCCTCGTCTCCGAAACCAACCTCGAATCCCTCGTCAAATCCACCTTCCCTCAATTGAACTTCAAGGTCTATTACTTTGATCCCGAGATCGTCCGCAACCTGATCTCCACCTCTGTCAGACAAGCCCTCGAACAACCCCTCAACTACGCCAGAAATTATCTCGCTGACCTCCTCGAACCCTGTGTCGAAAGAGTTATATACCTAGATTCCGATCTGGTTGTAGTCGACGACATTGCCAAGCTCTGGAGCACCAGCTTAGGTTCTAGAACCATCGGCGCCCCTGAATACTGCCACGCCAACTTCACCAAGTACTTCACCGCAGCGTTCTGGTCGGACACGCGCTTCGCGAGGGCGTTCGCCGGGCGGAGGCCATGCTACTTCAACACGGGCGTGATGGTGATAGATCTGGTGCGGTGGCGGAGAATCGGGTACAGCAAGAGGATAGAGAGGTGGATGGAGATTCAGAAGAACGATCGGATCTACGAGCTGGGTTCTCTGCCCCCGTTTCTGTTGGTGTTCGCGGGACACGTGGCGCCAATTGAGCACAGGTGGAACCAGCATGGGTTGGGTGGCGATAACGTGAAGGGGAGTTGCCGGGACCTGCACGCTGGGCCTGTGAGTCTTTTGCATTGGTCCGGTAGTGGCAAGCCCTGGACTCGATTGGACTCCAAACAGCCCTGTCCGCTTGATGCACTTTGGGCTCCTTATGATTTGTACGGTCACGCTCACTGA

Predicted protein sequences of Glyma10g01960

Limit To All Plant Sequences

>Glyma10g01960.1   sequence type=predicted peptide   gene model=Glyma10g01960   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLWLMRFSGFFSAAMLVILLSPSLQSFHPAEAIRSSHHLDGLLRLPPPRLSFRPAPRFRNAADANKCASSSVSTSVCDPSLVHVAITLDVEYLRGSIAAVHSILQHSQCPENIFFHFLVSETNLESLVKSTFPQLNFKVYYFDPEIVRNLISTSVRQALEQPLNYARNYLADLLEPCVERVIYLDSDLVVVDDIAKLWSTSLGSRTIGAPEYCHANFTKYFTAAFWSDTRFARAFAGRRPCYFNTGVMVIDLVRWRRIGYSKRIERWMEIQKNDRIYELGSLPPFLLVFAGHVAPIEHRWNQHGLGGDNVKGSCRDLHAGPVSLLHWSGSGKPWTRLDSKQPCPLDALWAPYDLYGHAH*

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