Glyma10g01890 - SoyBase

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Report for Sequence Feature Glyma10g01890

Feature Type:	gene_model
Chromosome:	Gm10
Start:	1352982
stop:	1360179
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma10g01890

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G47900	AT	Annotation by Michelle Graham. TAIR10: Protein of unknown function (DUF1624) \| chr5:19392408-19394963 FORWARD LENGTH=440	SoyBase	E_val: 3.00E-142	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
KOG4683	KOG	Uncharacterized conserved protein	JGI		ISS
PF07786	PFAM	Protein of unknown function (DUF1624)	JGI		ISS
UniRef100_G7IEH8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Heparan-alpha-glucosaminide N-acetyltransferase n=1 Tax=Medicago truncatula RepID=G7IEH8_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI000233C63E	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233C63E related cluster n=1 Tax=unknown RepID=UPI000233C63E	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma10g01890

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma10g01890

Paralog	Evidence	Comments
Glyma02g01820	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma10g01890 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.10g015300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma10g01890

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma10g01890

Limit To All Plant Sequences

>Glyma10g01890.3   sequence type=transcript   gene model=Glyma10g01890   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AGGAGCGCCCGCCAAACGAGGAAAATACTAAAACAACCTCATCTGAGACTTGGAAGTTGGAGGAAAATGTCAAGTGAGGTAGAAGAAGAAGAAAGAAGACCTCTTATCGGCCATGATTTAGGTTCCTCAATTCTCATCGTTCATCAAAATGAAGACACTATCTCAATCTGTCCTTTGCCACAATCCAATCCTACAGATACATCCTCTCTTTCTCTTCCTAATCAACGCCTTTCTTCTCTCGATGTCTTCCGCGGTCTAACTGTTGCGTTGATGATATTAGTTGATAATGTGGGAAGGGCATTCCCGTCCTTGAATCATTCTCCATGGTTTGGAGTGACACTGGCCGATTTTGTAATGCCGTTTTTTCTCTTTGTGGTTGGCGTTTCGATCGGTCTGGTATTCAAGAAAGTCTCTAGCAAACCCAACGCCACAAAGAAAGTCATATCGAGGACGCTTAAGCTTTTCCTTTTGGGACTGTTACTTCAAGGTGGGTATTTCCATGGGCACGGCAAATTAACGTATGGAGTTGATTTGAGCAAGATACGCTGGCTTGGCGTACTTCAGAGGATATCTATTGGATATTTCTTTGCCTCGATATCAGAGATTTGGCTTGTAAACCATAATATTTTGGTTGACTCACCTGCAGGTTTTGTGAGGAAATACTCCATTCAGTGGATGTTTTCTATCTTACTTTGCTCAGTGTACCTTTGTTTGCTCTACGGTCTTTATGTTCCGAATTGGAAATTCAAACATTCTAATTTGCTTTCGTCCAGTGACTCCAGTCATCTATCAATTATTCAAAACGTTCATTGTGAAGTGAGGGGCAGTCTTGAACCTCCTTGTAATGTTGTGGGATTTATTGATAGATTAATTCTTGGTGAAGATCATATGTACCAGCGTCCTGTGTACATAAGAACAAAGGAGTGTAGTGTCAATTCTCCTGACTATGGACCCTTGCCTCCAGATTCACCTGGATGGTGCCTTGCACCATTTGACCCAGAGGGTATTTTGAGTTCACTGATGGCTGCAATTACTTGTTTCATGGGATTGCAATATGGGCACATAATTGTACATTTGCAGGGCCACAAGCAGAGGGTACTTCTTTGGTCTGTGTTTTCCTTCTCTCTATTGCTCATAGGATACATTCTGGAGATCTTAGTTTTTCAGGAATGCCTTTATCAAAAGCACTGTACACATTAAGCTACACGTGTATCACTGCAGGGGCATCAGGCTTAGTCTTGACTGCTATCTATTACATTGTTGACATAGAACATCTCAGAAAGCCTACAGTTTTACTGCAATGGATGGGAATGAATGCTCTTGTTGTATATGCATTGGCAGCTTGTGACATTTTCCCAGCAGTTATCCAGGGTTTCTATTGGCATTCTCCTGAAAATAATTTGGTTGACGCCAGTGAAGCTTTAATGCAGATCATATTTCATTCCAAAAGGTGGGGTACACTGGCCTTTGTAATAGTTGAGATTTTATTCTGGGGTCTTTTTGCTGGTTTCCTCCACAAGAAAAGGATATATATAAAATTGTAATAGATCACCCAATCATGCAAAAGACGATGACATGTACATATATTTATATATGTTCCTTCTAGATATCTTCCTCTAGAAACTAGCCATGCTTTTAAGTACATATCTTGTGTGGTTATATTTTGTTGATTCTCCTGTAGCCTGCCAAAGTTGTCTTTCTCCACTTTAGCTTTGGAATGTCTGAAAGGCATTTCCACTATTTGTGTCTTGAAAATCTTGAGGGTAGCAGAATTCAGCATGGGACTGAATGCTTAACTAAGACCTTTTGGATGTACGCCCCGCAATATGACCAAGTTCTTTTTCTTTTCTTTTATCCAGAACCAAGATTGTTACAGCTATTTGCCATTACTAGGGGAGTTAATGTACAGGTGAGGAGGGGTTCCTCTTCGGTTTCGTGGAGACAAAATCAGGAGAAAGTTTTGTATA

Coding sequences of Glyma10g01890

Limit To All Plant Sequences

>Glyma10g01890.2   sequence type=CDS   gene model=Glyma10g01890   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCAAGTGAGGTAGAAGAAGAAGAAAGAAGACCTCTTATCGGCCATGATTTAGGTTCCTCAATTCTCATCGTTCATCAAAATGAAGACACTATCTCAATCTGTCCTTTGCCACAATCCAATCCTACAGATACATCCTCTCTTTCTCTTCCTAATCAACGCCTTTCTTCTCTCGATGTCTTCCGCGGTCTAACTGTTGCGTTGATGATATTAGTTGATAATGTGGGAAGGGCATTCCCGTCCTTGAATCATTCTCCATGGTTTGGAGTGACACTGGCCGATTTTGTAATGCCGTTTTTTCTCTTTGTGGTTGGCGTTTCGATCGGTCTGGTATTCAAGAAAGTCTCTAGCAAACCCAACGCCACAAAGAAAGTCATATCGAGGACGCTTAAGCTTTTCCTTTTGGGACTGTTACTTCAAGGTGGGTATTTCCATGGGCACGGCAAATTAACGTATGGAGTTGATTTGAGCAAGATACGCTGGCTTGGCGTACTTCAGAGGATATCTATTGGATATTTCTTTGCCTCGATATCAGAGATTTGGCTTGTAAACCATAATATTTTGGTTGACTCACCTGCAGGTTTTGTGAGGAAATACTCCATTCAGTGGATGTTTTCTATCTTACTTTGCTCAGTGTACCTTTGTTTGCTCTACGGTCTTTATGTTCCGAATTGGAAATTCAAACATTCTAATTTGCTTTCGTCCAGTGACTCCAGTCATCTATCAATTATTCAAAACGTTCATTGTGAAGTGAGGGGCAGTCTTGAACCTCCTTGTAATGTTGTGGGATTTATTGATAGATTAATTCTTGGTGAAGATCATATGTACCAGCGTCCTGTGTACATAAGAACAAAGGAGTGTAGTGTCAATTCTCCTGACTATGGACCCTTGCCTCCAGATTCACCTGGATGGTGCCTTGCACCATTTGACCCAGAGGGTATTTTGAGTTCACTGATGGCTGCAATTACTTGTTTCATGGGATTGCAATATGGGCACATAATTGTACATTTGCAGGGCCACAAGCAGAGGGTACTTCTTTGGTCTGTGTTTTCCTTCTCTCTATTGCTCATAGGATACATTCTGGAGATCTTAGGAATGCCTTTATCAAAAGCACTGTACACATTAAGCTACACGTGTATCACTGCAGGGGCATCAGGCTTAGTCTTGACTGCTATCTATTACATTGTTGACATAGAACATCTCAGAAAGCCTACAGTTTTACTGCAATGGATGGGAATGAATGCTCTTGTTGTATATGCATTGGCAGCTTGTGACATTTTCCCAGCAGTTATCCAGGGTTTCTATTGGCATTCTCCTGAAAATAATTTGGTTGACGCCAGTGAAGCTTTAATGCAGATCATATTTCATTCCAAAAGGTGGGGTACACTGGCCTTTGTAATAGTTGAGATTTTATTCTGGGGTCTTTTTGCTGGTTTCCTCCACAAGAAAAGGATATATATAAAATTGTAA

>Glyma10g01890.3   sequence type=CDS   gene model=Glyma10g01890   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCAAGTGAGGTAGAAGAAGAAGAAAGAAGACCTCTTATCGGCCATGATTTAGGTTCCTCAATTCTCATCGTTCATCAAAATGAAGACACTATCTCAATCTGTCCTTTGCCACAATCCAATCCTACAGATACATCCTCTCTTTCTCTTCCTAATCAACGCCTTTCTTCTCTCGATGTCTTCCGCGGTCTAACTGTTGCGTTGATGATATTAGTTGATAATGTGGGAAGGGCATTCCCGTCCTTGAATCATTCTCCATGGTTTGGAGTGACACTGGCCGATTTTGTAATGCCGTTTTTTCTCTTTGTGGTTGGCGTTTCGATCGGTCTGGTATTCAAGAAAGTCTCTAGCAAACCCAACGCCACAAAGAAAGTCATATCGAGGACGCTTAAGCTTTTCCTTTTGGGACTGTTACTTCAAGGTGGGTATTTCCATGGGCACGGCAAATTAACGTATGGAGTTGATTTGAGCAAGATACGCTGGCTTGGCGTACTTCAGAGGATATCTATTGGATATTTCTTTGCCTCGATATCAGAGATTTGGCTTGTAAACCATAATATTTTGGTTGACTCACCTGCAGGTTTTGTGAGGAAATACTCCATTCAGTGGATGTTTTCTATCTTACTTTGCTCAGTGTACCTTTGTTTGCTCTACGGTCTTTATGTTCCGAATTGGAAATTCAAACATTCTAATTTGCTTTCGTCCAGTGACTCCAGTCATCTATCAATTATTCAAAACGTTCATTGTGAAGTGAGGGGCAGTCTTGAACCTCCTTGTAATGTTGTGGGATTTATTGATAGATTAATTCTTGGTGAAGATCATATGTACCAGCGTCCTGTGTACATAAGAACAAAGGAGTGTAGTGTCAATTCTCCTGACTATGGACCCTTGCCTCCAGATTCACCTGGATGGTGCCTTGCACCATTTGACCCAGAGGGTATTTTGAGTTCACTGATGGCTGCAATTACTTGTTTCATGGGATTGCAATATGGGCACATAATTGTACATTTGCAGGGCCACAAGCAGAGGGTACTTCTTTGGTCTGTGTTTTCCTTCTCTCTATTGCTCATAGGATACATTCTGGAGATCTTAGTTTTTCAGGAATGCCTTTATCAAAAGCACTGTACACATTAA

Predicted protein sequences of Glyma10g01890

Limit To All Plant Sequences

>Glyma10g01890.2   sequence type=predicted peptide   gene model=Glyma10g01890   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSSEVEEEERRPLIGHDLGSSILIVHQNEDTISICPLPQSNPTDTSSLSLPNQRLSSLDVFRGLTVALMILVDNVGRAFPSLNHSPWFGVTLADFVMPFFLFVVGVSIGLVFKKVSSKPNATKKVISRTLKLFLLGLLLQGGYFHGHGKLTYGVDLSKIRWLGVLQRISIGYFFASISEIWLVNHNILVDSPAGFVRKYSIQWMFSILLCSVYLCLLYGLYVPNWKFKHSNLLSSSDSSHLSIIQNVHCEVRGSLEPPCNVVGFIDRLILGEDHMYQRPVYIRTKECSVNSPDYGPLPPDSPGWCLAPFDPEGILSSLMAAITCFMGLQYGHIIVHLQGHKQRVLLWSVFSFSLLLIGYILEILGMPLSKALYTLSYTCITAGASGLVLTAIYYIVDIEHLRKPTVLLQWMGMNALVVYALAACDIFPAVIQGFYWHSPENNLVDASEALMQIIFHSKRWGTLAFVIVEILFWGLFAGFLHKKRIYIKL*

>Glyma10g01890.3   sequence type=predicted peptide   gene model=Glyma10g01890   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSSEVEEEERRPLIGHDLGSSILIVHQNEDTISICPLPQSNPTDTSSLSLPNQRLSSLDVFRGLTVALMILVDNVGRAFPSLNHSPWFGVTLADFVMPFFLFVVGVSIGLVFKKVSSKPNATKKVISRTLKLFLLGLLLQGGYFHGHGKLTYGVDLSKIRWLGVLQRISIGYFFASISEIWLVNHNILVDSPAGFVRKYSIQWMFSILLCSVYLCLLYGLYVPNWKFKHSNLLSSSDSSHLSIIQNVHCEVRGSLEPPCNVVGFIDRLILGEDHMYQRPVYIRTKECSVNSPDYGPLPPDSPGWCLAPFDPEGILSSLMAAITCFMGLQYGHIIVHLQGHKQRVLLWSVFSFSLLLIGYILEILVFQECLYQKHCTH*

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