Glyma10g01860 - SoyBase

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Report for Sequence Feature Glyma10g01860

Feature Type:	gene_model
Chromosome:	Gm10
Start:	1343424
stop:	1344870
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma10g01860

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
UniRef100_I1L7R9	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1L7R9_SOYBN	SoyBase	E_val: 4.00E-144	ISS

Expression Patterns of Glyma10g01860

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma10g01860

Paralog	Evidence	Comments
Glyma02g01791	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma10g01860 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.10g015100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma10g01860

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma10g01860

Limit To All Plant Sequences

>Glyma10g01860.1   sequence type=CDS   gene model=Glyma10g01860   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTGAAAATTCTATGATCATTAGCATTGACCAAAAAGCAATGGTTACCCCTCATGAAGAACCTAATTATAACATCACTCGTTCTTCCCTCAAGAATTCCATGAGGCCGAAGAACTTCTTCAAGGTGGCGCTGTTCATGATGCGAGGGCGTTCTCGTAAATCCAAAATGCTCGCTGTGGATGACGAGTCCAAGAGCATATGGAGGAAGCTCGTGGGGTCCATGAGGCCATTGCACCTACAAAGCAACCATGACGATGATAATAATAATAACGTTAATCCTCATCAATCTAAAATGATGAAGACTACCTCGGCGCCGTCTGAAAACGGCGACGATAGTTTTGACTCTGCAACGGAGTTTGGAAACTCGTCGTCTCCGGCTAGTAGCCGTTATGCCTCGGCCGTTGGGTTAAACGAAATGGTGCAGGAGGAGGAGGAGAATGAGAAGATTAATAATAATGATGGGGAGGGGGATGAGATGATTGATGCCAAGGCTGAAGAGTTCATTGCTCAATTTTACCATCAAATGAGGTTGCAGCGTTTGGATGTCATGGATCATCATTACCAAGAGATAAGCATGAGGTCCTTAGGCTTATGA

Predicted protein sequences of Glyma10g01860

Limit To All Plant Sequences

>Glyma10g01860.1   sequence type=predicted peptide   gene model=Glyma10g01860   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAENSMIISIDQKAMVTPHEEPNYNITRSSLKNSMRPKNFFKVALFMMRGRSRKSKMLAVDDESKSIWRKLVGSMRPLHLQSNHDDDNNNNVNPHQSKMMKTTSAPSENGDDSFDSATEFGNSSSPASSRYASAVGLNEMVQEEEENEKINNNDGEGDEMIDAKAEEFIAQFYHQMRLQRLDVMDHHYQEISMRSLGL*

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