Report for Sequence Feature Glyma10g01830
Feature Type: gene_model
Chromosome: Gm10
Start: 1322996
stop: 1326083
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma10g01830
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT2G25920 AT
Annotation by Michelle Graham. TAIR10: BEST Arabidopsis thaliana protein match is: 3'-5' exonuclease domain-containing protein / K homology domain-containing protein / KH domain-containing protein (TAIR:AT2G25910.2); Has 131 Blast hits to 125 proteins in 54 species: Archae - 0; Bacteria - 50; Metazoa - 12; Fungi - 12; Plants - 41; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink). | chr2:11054425-11055916 REVERSE LENGTH=280
SoyBase E_val: 5.00E-78 ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0003674 GO-mf
Annotation by Michelle Graham. GO Molecular Function: molecular function
SoyBase N/A ISS
UniRef100_I1L7R6 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=2 Tax=Glycine max RepID=I1L7R6_SOYBN
SoyBase E_val: 1.00E-147 ISS
UniRef100_Q52ZI4 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Expressed protein n=1 Tax=Pisum sativum RepID=Q52ZI4_PEA
SoyBase E_val: 4.00E-114 ISS
Expression Patterns of Glyma10g01830
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma10g01830
Paralog Evidence Comments
Glyma02g01760 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma10g01830 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.10g014800 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma10g01830
Coding sequences of Glyma10g01830
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma10g01830.1 sequence type=CDS gene model=Glyma10g01830 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGGTTCTGATTCCAATTTGGGAGGGTCGCCCTCAGCATCTTCGCCCAGTGCCAAACGCACCAGAGATCCCGAAGAGGAAGTTTACCTCGACAATCTTCGCTCTCACAAGCGTTACCTAAGCGAGATAATGGCATCCAGTCTTAACGGGTTGACAGTTGGAGACTCACTTCCTGATAATCTCATGGATTCTCCAGCAAGGTCTGAAAGCATGTTCTCTTTCAGAGATGATATGTCTTTTTTGCAATATTCACCGATGTCAGAAGATTCAGATGACTTAAGGTTTTGCGAGACCCCTGTGCACAGTTGCTCATCTCAACTCGACAGTCTTCCCAGTAGTCCAGTTTCTCCACACAGGTACCAAAGACCGCAGAATGCATCATCTTCAGCACCTTCCTCAAGTTCGAATGCTTCTCATGTCTCCACCGTTACTTGCCCCCAGCCTCGTCAGAGAGGGTCAGATTCTGAAGGCCGCTTCCCATCATCTCCAAGTGATATATGCCACTCAGCTGACTTGAGAAGAGCTGCACTTCTAAGATCTGTGCAGATGAGAACACAACCTCCTAGCCCTGCATCTTTGGACCTTCCCTTTGTTTCTAACCCAGAGTCTGCTCCTAACATAGATCCTGAGGAAAGATCATGCCCATATATGAAATCTCTGGTTGACGAGAGAGAGTATTGA
Predicted protein sequences of Glyma10g01830
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma10g01830.1 sequence type=predicted peptide gene model=Glyma10g01830 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MGSDSNLGGSPSASSPSAKRTRDPEEEVYLDNLRSHKRYLSEIMASSLNGLTVGDSLPDNLMDSPARSESMFSFRDDMSFLQYSPMSEDSDDLRFCETPVHSCSSQLDSLPSSPVSPHRYQRPQNASSSAPSSSSNASHVSTVTCPQPRQRGSDSEGRFPSSPSDICHSADLRRAALLRSVQMRTQPPSPASLDLPFVSNPESAPNIDPEERSCPYMKSLVDEREY*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
