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Report for Sequence Feature Glyma10g01801

Feature Type:gene_model
Chromosome:Gm10
Start:1308915
stop:1313283
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma10g01801
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G49330AT Annotation by Michelle Graham. TAIR10: myb domain protein 111 | chr5:19999147-20001293 REVERSE LENGTH=342 SoyBaseE_val: 4.00E-66ISS
GO:0006355GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0051555GO-bp Annotation by Michelle Graham. GO Biological Process: flavonol biosynthetic process SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003677GO-mf Annotation by Michelle Graham. GO Molecular Function: DNA binding SoyBaseN/AISS
GO:0003700GO-mf Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity SoyBaseN/AISS
PTHR10641Panther MYB-RELATED JGI ISS
PF00249PFAM Myb-like DNA-binding domain JGI ISS
UniRef100_C6T7N0UniRef Annotation by Michelle Graham. Best UniRef hit: Putative uncharacterized protein n=1 Tax=Glycine max RepID=C6T7N0_SOYBN SoyBaseE_val: 0ISS
UniRef100_G7KSR7UniRef Annotation by Michelle Graham. Most informative UniRef hit: Myb-like transcription factor n=1 Tax=Medicago truncatula RepID=G7KSR7_MEDTR SoyBaseE_val: 4.00E-80ISS

Expression Patterns of Glyma10g01801
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma10g01801 not represented in the dataset
Glyma10g01801 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma10g01801
ParalogEvidenceComments
Glyma02g01740 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma10g01801 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.10g014600 Wm82.a2.v1IGC As supplied by JGI

References for Glyma10g01801
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma10g01801
>Glyma10g01801.1   sequence type=CDS   gene model=Glyma10g01801   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGAAGGGCTCCTTGTTGTGAGAAAGTGGGGTTGAAGAAAGGGAGGTGGACAGCAGAGGAGGATGAGACCTTGGCAAAATACATTCAGACCAACGGGGAAGGTTCTTGGAGGTCATTGCCTAAAAATGCAGGATTATTAAGGTGCGGGAAGAGTTGCAGGCTGAGATGGATTAACTATTTGAGAGCTGACCTTAAAAGAGGGAACATTTCTGCTGAAGAGGAAAATACAATCGTTAAGTTGCACGCTTCTTTTGGTAACAGTCATTTACCAGGAAGAACGGACAACGAGATAAAAAACTACTGGAATTCTCACCTCAGCAGAAAAATTTACAGTTTCCCAGGTGCAAGTGCAGGGATCATGGATACACCTAAAGTAGCGTCTATTCCTCCCAAGCTCAAAGGTGGTAGAACAAGCCGTTGGGCCATGAATAAGAACAAAACCTACACCCAAAATGTCAATGTCGCAATTTACCAGAGACCCAAACAAACGTTTACTCAACCAAATAGTGATTTCACGGTCTTGGACGCTGACGTGGCAGATGTGAATGAGCCAAGAATAGAGGAGCTAGAGGCAGAGGTAAATAAATGTGACAGGAGCGTTGATGAAAGTAACGATGAAGACATCTTGGGACTGTGCCAAATGGAGGGCATTAGTGACATTTTGGAAAGTTGGCTTCCGGAAACAACATGTGTGGTTTGGGACTTGAGTGAAGAGATAGACAACAATGACATGGTAGTGAGGGGGTATTCATGCTCTTCTTCCATGGCATTGGATCAACACTGGGATTGGGAGAGTGTCATAGAGTTTAATAACGTTGTCGAGTCCGAAGCTTGTAATAATTGGGAGCAACAAGAAAAACCGCTCACTTGGCCGTGGGAGGACGATGCTTGGGAAAGCCAAAGCAAAAATTTGGGAGAGACAGATACTCAGATGCAAAACGACATGGTTGATTGGTTCCTCTCTTGA
Predicted protein sequences of Glyma10g01801
>Glyma10g01801.1   sequence type=predicted peptide   gene model=Glyma10g01801   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGRAPCCEKVGLKKGRWTAEEDETLAKYIQTNGEGSWRSLPKNAGLLRCGKSCRLRWINYLRADLKRGNISAEEENTIVKLHASFGNSHLPGRTDNEIKNYWNSHLSRKIYSFPGASAGIMDTPKVASIPPKLKGGRTSRWAMNKNKTYTQNVNVAIYQRPKQTFTQPNSDFTVLDADVADVNEPRIEELEAEVNKCDRSVDESNDEDILGLCQMEGISDILESWLPETTCVVWDLSEEIDNNDMVVRGYSCSSSMALDQHWDWESVIEFNNVVESEACNNWEQQEKPLTWPWEDDAWESQSKNLGETDTQMQNDMVDWFLS*






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