Glyma10g01770 - SoyBase

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Report for Sequence Feature Glyma10g01770

Feature Type:	gene_model
Chromosome:	Gm10
Start:	1289270
stop:	1293478
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma10g01770

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G02660	AT	Annotation by Michelle Graham. TAIR10: alpha/beta-Hydrolases superfamily protein \| chr1:572187-574746 REVERSE LENGTH=713	SoyBase	E_val: 0	ISS
GO:0006629	GO-bp	Annotation by Michelle Graham. GO Biological Process: lipid metabolic process	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0004806	GO-mf	Annotation by Michelle Graham. GO Molecular Function: triglyceride lipase activity	SoyBase	N/A	ISS
PF01764	PFAM	Lipase (class 3)	JGI		ISS
UniRef100_G7IDS8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Lipase n=1 Tax=Medicago truncatula RepID=G7IDS8_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1L7R1	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1L7R1_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma10g01770

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma10g01770

Paralog	Evidence	Comments
Glyma02g01720	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma10g01770 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.10g014400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma10g01770

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma10g01770

Limit To All Plant Sequences

>Glyma10g01770.1   sequence type=CDS   gene model=Glyma10g01770   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAACTGTGTGTTTAAAATCTGGGATGGTTCCCACGATCTCTATTAGTGGGTCGCTGGATGCACGTGCCAATCCTTCTCAGGTGAGCACGGTGGGGCGCGCCGCCGGGGATAAACCGCCGCAGAGGTCGGTGTTTTCGAGGTTTTCCTTTTGGTACCCTTTGGAATCTCTCTGGCCTCGGGGGAACAACAGCAGGTACAAAGGGCTGGCCCTCGACGACGCCGTTTTGGCGGACAACAACGCCGAAGCGAAGGCCGTTAGAGATGACGGCCAGGGTGACGGAACGGAAAGGCAGACCGGAAACTGGGTTTTGAAGATTCTGCATGTGAAGTCCGTGTGGGAAGGGAAACAGCGCAATGAAGAGGATGGTACGGTTCATGATCAAACTCAAACCAATTTCGACGAGGAGGAGGTGTGTGAATGTGATGCTTGCGGGGTTGATGAAGATGACGGCTACTGTGAAGAAGAAGAGGCTGAATTCGATAGAGGCTCGTTTTCGAGAATGCTTCGGAGGGTATCGTTAGGCGAAGCTAGATTGTACGCTCAGATGTCACACTTGGGGAACTTGGCTTACGATATACCTAGAATCAAGCCAGGGAAACTCTTGAAACATCATGGTCTGCGCTTTGTAATTTCATCGATAGAGAAGAAGGAATTGGCAGTGGCAGCAACAGCTGAAAAGGATCCCCAGAAAGTTGGATCTTCAATAGAGAAGAAGGAATTTGCAGCAATTGCTGAAAAGGATCCCCAGAAAGTTGGATCTTCAACAGAGAAGAAGGAATTTGCAGCAATTGCTGAAAAGGATCCCCAGAAAGTTGAAACTGATGAGAAGGTAGAAGAAAAAGAAGAAACAAAGGATCCAAAGAATGCTGGATACAAGATAAGTGCAACTGCTGCTTATAATATTGCTGCCTCTGCTGCCACTTATCTGCATTCTCAGACTAGTAGCATATTTCCATTCAAATCCTCAAATGCTGTGACTGGTGAAGGTTCACTTGAAGGAAGCAATGAAAGCCTTGACACTGTTAACATGCTAAACACAGAGGTGGCATCTTTGATGGCAACTACTGATTCAGTGACAGCAGTGGTTGCAGCAAAGGAGGAAGTAAAGCAGGCTGTTGCAGATGATCTGAACTCTGCACATTCAACACCCTGTGAATGGTTTGTCTGTGATGATGACCAGAGTGCTACAAGGTTTTTCGTTATTCAGGGTTCTGAGACGTTGGCTTCATGGCAAGCAAACCTACTCTTTGAGCCAATTAAATTTGAGGGTTTAGATGTACTTGTGCACAGAGGTATATATGAGGCTGCTAAAGGGATATATCAACAGATGTTGCCAGAAGTACGTGCTCACCTAAAATCTCGAGGTTCTCGTGCAACTTTTCGTTTCACAGGCCATTCTCTTGGTGGAAGCTTGGCATTACTTGTGAATCTCATGCTATTGATAAGGAATGAAGTGCCGGTCTCCTCTCTACTTCCTGTGATAACATTTGGTTCCCCATCCATCATGTGTGGAGGTGATAGTCTGCTAAAAAAATTAGGTTTGCCTAGGAGCCATGTTCAAGCAATCACAATGCACAGAGACATAGTACCACGAGCATTTTCTTGCAATTACCCTAATCATGTTGCAGAACTATTGAAGGCTGTCAATGGGAACTTCCGTAGTCATCCTTGTCTCAATAAACAGAAGCTACTATATGCACCAATGGGTAATCTGCTGATTCTGCAGCCAGATGAGAAATTTTCACCAAGCCATCATCTCCTACCATCTGGCAGTGGTCTATATCTTTTGTGTTGTCCATTATCAGAATCCGATGACACAGAGAAGCGGCTCCGAGCTGCTCAGATGGTCTTCTTAAACTCACCTCATCCACTTGAGATATTAAGTGACCGATCTGCTTATGGATCTGGAGGAAGTATACAACGAGATCATGACATGAACTCTTACTTAAAGTCTTTGAGAACTGTGATTCGCAAAGAACTTAACCAGATCCGTAAAGCTAAGAGGGAGCAACGGCGTAAGGTGTGGTGGCCTCTTCTGTTATCTCGTGGAGCTGATACCAGCATTGTTGCTGGGAGGTCCATGATATCAATCAATGTGGGTCAACGCCAGTCACCCTTCTCCAGCGTGATACAAACAGGGAGAGAGTCCCTGAAAAGGTTCAGTAGGATTGTTACATCCCAACATATGCATTTGTTTGTGTTGCTTTTGTTCCCTGCTCGGTTGTTGCTCTTGGGAACATATAGCGTAATTAACCTCAAATGA

Predicted protein sequences of Glyma10g01770

Limit To All Plant Sequences

>Glyma10g01770.1   sequence type=predicted peptide   gene model=Glyma10g01770   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
METVCLKSGMVPTISISGSLDARANPSQVSTVGRAAGDKPPQRSVFSRFSFWYPLESLWPRGNNSRYKGLALDDAVLADNNAEAKAVRDDGQGDGTERQTGNWVLKILHVKSVWEGKQRNEEDGTVHDQTQTNFDEEEVCECDACGVDEDDGYCEEEEAEFDRGSFSRMLRRVSLGEARLYAQMSHLGNLAYDIPRIKPGKLLKHHGLRFVISSIEKKELAVAATAEKDPQKVGSSIEKKEFAAIAEKDPQKVGSSTEKKEFAAIAEKDPQKVETDEKVEEKEETKDPKNAGYKISATAAYNIAASAATYLHSQTSSIFPFKSSNAVTGEGSLEGSNESLDTVNMLNTEVASLMATTDSVTAVVAAKEEVKQAVADDLNSAHSTPCEWFVCDDDQSATRFFVIQGSETLASWQANLLFEPIKFEGLDVLVHRGIYEAAKGIYQQMLPEVRAHLKSRGSRATFRFTGHSLGGSLALLVNLMLLIRNEVPVSSLLPVITFGSPSIMCGGDSLLKKLGLPRSHVQAITMHRDIVPRAFSCNYPNHVAELLKAVNGNFRSHPCLNKQKLLYAPMGNLLILQPDEKFSPSHHLLPSGSGLYLLCCPLSESDDTEKRLRAAQMVFLNSPHPLEILSDRSAYGSGGSIQRDHDMNSYLKSLRTVIRKELNQIRKAKREQRRKVWWPLLLSRGADTSIVAGRSMISINVGQRQSPFSSVIQTGRESLKRFSRIVTSQHMHLFVLLLFPARLLLLGTYSVINLK*

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