Glyma10g01760 - SoyBase

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Report for Sequence Feature Glyma10g01760

Feature Type:	gene_model
Chromosome:	Gm10
Start:	1282963
stop:	1287534
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma10g01760

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G14290	AT	Annotation by Michelle Graham. TAIR10: 20S proteasome alpha subunit E2 \| chr3:4764364-4766381 FORWARD LENGTH=237	SoyBase	E_val: 2.00E-171	ISS
GO:0006511	GO-bp	Annotation by Michelle Graham. GO Biological Process: ubiquitin-dependent protein catabolic process	SoyBase	N/A	ISS
GO:0006635	GO-bp	Annotation by Michelle Graham. GO Biological Process: fatty acid beta-oxidation	SoyBase	N/A	ISS
GO:0009853	GO-bp	Annotation by Michelle Graham. GO Biological Process: photorespiration	SoyBase	N/A	ISS
GO:0051603	GO-bp	Annotation by Michelle Graham. GO Biological Process: proteolysis involved in cellular protein catabolic process	SoyBase	N/A	ISS
GO:0000502	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: proteasome complex	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0005839	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: proteasome core complex	SoyBase	N/A	ISS
GO:0019773	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: proteasome core complex, alpha-subunit complex	SoyBase	N/A	ISS
GO:0022626	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosolic ribosome	SoyBase	N/A	ISS
GO:0004175	GO-mf	Annotation by Michelle Graham. GO Molecular Function: endopeptidase activity	SoyBase	N/A	ISS
GO:0004298	GO-mf	Annotation by Michelle Graham. GO Molecular Function: threonine-type endopeptidase activity	SoyBase	N/A	ISS
GO:0004540	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ribonuclease activity	SoyBase	N/A	ISS
GO:0008233	GO-mf	Annotation by Michelle Graham. GO Molecular Function: peptidase activity	SoyBase	N/A	ISS
KOG0176	KOG	20S proteasome, regulatory subunit alpha type PSMA5/PUP2	JGI		ISS
PTHR11599	Panther	PROTEASOME SUBUNIT ALPHA/BETA	JGI		ISS
PTHR11599:SF14	Panther	PROTEASOME BETA/DELTA SUBUNIT	JGI		ISS
PF00227	PFAM	Proteasome subunit	JGI		ISS
PF10584	PFAM	Proteasome subunit A N-terminal signature	JGI		ISS
UniRef100_I1L7R0	UniRef	Annotation by Michelle Graham. Best UniRef hit: Proteasome subunit alpha type n=1 Tax=Glycine max RepID=I1L7R0_SOYBN	SoyBase	E_val: 6.00E-174	ISS
UniRef100_I1L7R0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Proteasome subunit alpha type n=1 Tax=Glycine max RepID=I1L7R0_SOYBN	SoyBase	E_val: 6.00E-174	ISS

Expression Patterns of Glyma10g01760

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma10g01760 not represented in the dataset	Glyma10g01760 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma10g01760 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.10g014300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma10g01760

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma10g01760

Limit To All Plant Sequences

>Glyma10g01760.1   sequence type=CDS   gene model=Glyma10g01760   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTTCTCACAAGGACTGAGTATGACCGAGGAGTCAACACCTTTTCTCCCGAAGGCCGTTTGTTTCAGGTTGAGTATGCAATCGAAGCCATCAAGCTGGGATCAACTGCGATTGGGTTGAAGACCAAAGAAGGAGTTGTCCTTGCAGTTGAAAAGCGCATCACATCGCCGCTCCTGGAGCCTAGTAGTGTTGAGAAAATTATGGAAATTGATGAGCACATCGGTTGTGCAATGAGTGGGTTGATTGCAGATGCTCGAACACTTGTTGAGCATGCACGGGTGGAAACTCAGAATCACAGGTTCTCCTATGGTGAGCCTATGACTGTTGAGTCCACCACCCAAGCTCTTTGTGATCTAGCCTTGCGTTTTGGTGAAGGTGATGAAGAGTCCATGTCCCGACCATTTGGAGTATCTCTCCTCATTGCTGGTCATGATGAGAATGGACCTAGCTTATACTACACTGATCCATCTGGCACATTTTGGCAATGCAATGGCAAAGCTATTGGTTCAGGGTCAGAAGGTGCAGACAGTTCTCTACAAGAACAATTCAGCAAGGACCTAACCCTTCAAGAAGCCGAGACTATTGCTTTATCCATTTTGAAGCAAGTTATGGAAGAAAAGGTCACTCCCAACAACGTTGACATTGCCAAGGTGGCTCCAACGTATCATCTTTATACACCGTCTGAGGTGGAAGCTGTGATAAGTCGTCTATGA

Predicted protein sequences of Glyma10g01760

Limit To All Plant Sequences

>Glyma10g01760.1   sequence type=predicted peptide   gene model=Glyma10g01760   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MFLTRTEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGHDENGPSLYYTDPSGTFWQCNGKAIGSGSEGADSSLQEQFSKDLTLQEAETIALSILKQVMEEKVTPNNVDIAKVAPTYHLYTPSEVEAVISRL*

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