SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G62580 | AT | Annotation by Michelle Graham. TAIR10: Late embryogenesis abundant protein (LEA) family protein | chr3:23146931-23147735 FORWARD LENGTH=213 | SoyBase | E_val: 1.00E-122 | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0005783 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| KOG2886 | KOG | Uncharacterized conserved protein | JGI | ISS | |
| PTHR23241 | Panther | LATE EMBRYOGENESIS ABUNDANT (PLANTS) LEA-RELATED | JGI | ISS | |
| UniRef100_C6SXE8 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6SXE8_SOYBN | SoyBase | E_val: 5.00E-150 | ISS |
| UniRef100_G7IDS7 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Transmembrane protein n=1 Tax=Medicago truncatula RepID=G7IDS7_MEDTR | SoyBase | E_val: 2.00E-133 | ISS |
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Glyma10g01750 not represented in the dataset |
Glyma10g01750 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.10g014200 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma10g01750.2 sequence type=transcript gene model=Glyma10g01750 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GTATCTTCGTTTGCTTTATATCTCCTGAAGCAGAACATCACCTTTCCTATTTACTCACTGTGTGATCTAATCTTCTTCTATGGGTTGGCTTAGTCGGTTCATAACTGCCGTGGCTTTCTTAGCCATCGGAGTGATATTCTCACCGGAGACACTGGGGTCAAAATCAACCACACTTTCCACCTACCTCAAACTCGCTCACCTCCTCTGCTTCTCCACCGCCTTCGGCGCCGCTCTGTGGGTAACATTCATCGGCGGCATCATCATGTTTAAGTACGCATTTTTATTTTTATCATCCCTAATTTTATGTATTTATTATTCTTAGAATTTTGGATGAGTCTAATTTAACTCCAAAGGCTGGCTCAAGTGACAAGGGCTGTCACTTATATACACTATTTTGATCATATGACTAATCCATGTGGGATTTTCTAACAATTGTGATTTTGTTGAATGTTGTGGTTTAGAAATCTGCCGCGGCATCAGTTTGGGAACCTGCAAAGCAAGATGTTTCCGGCGTATTTCTCGATGGTGGGTGTCTGCTGCGCCGTATCGGTGGCTTCCTTTGGCTACCTTCACCCGTGGAAAACTTCCTCCACCACTGAGAGATACCAACTTGGGTTTTTGCTCTCTTCCTTTGCGTTCAATCTTACCAACTTGTTTGTCTTTACACCCATGACCATTGAGATGATGAAGCAGAGGCATAAAGTGGAGAGAGAAAATAATATAGGGGAAGAAGTTGGGTGGTCAAAAAATGTAGAAGTTGCAAAGTCAAACCCAAAGCTTGCAGCCATGAATAAGAAGTTTGGTATGATTCATGGATTATCTTCCCTTGCCAATATAATGTCGTTTGGCAGTCTAGCAATACACTCTTGGTACTTGGCAGGTAAAATTGATCTCTGATTCAGTTTCTGCTTCCAATTCTATGAAAGACAAGTGAGTTTCTTGTGAAGAGATGTATAAGTGAGGATCTCAGTGTTCTCTCTATCTTCCACTTTCTTGCTTTATTGCCAAGTAAAAAGAGTCTAGAATGTCTGTGCAATTTATGAAATGTACTATCTAAGTATTACAGCATATTGATTGGTCAAGAAAATCTTATGGGTTGCCATGGAAACATAATGTAATCATCCTACCTCACATGAATAAAATAAGTAGTCTCTTTGAGACGGTTTACATTTTGGATACTCTCAGTTAAAATTTGGGGTGTGGAATGGATTGGATGGACTGGATAAATTTTTAATTAAAAT
>Glyma10g01750.1 sequence type=CDS gene model=Glyma10g01750 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGTTGGCTTAGTCGGTTCATAACTGCCGTGGCTTTCTTAGCCATCGGAGTGATATTCTCACCGGAGACACTGGGGTCAAAATCAACCACACTTTCCACCTACCTCAAACTCGCTCACCTCCTCTGCTTCTCCACCGCCTTCGGCGCCGCTCTGTGGGTAACATTCATCGGCGGCATCATCATGTTTAAAAATCTGCCGCGGCATCAGTTTGGGAACCTGCAAAGCAAGATGTTTCCGGCGTATTTCTCGATGGTGGGTGTCTGCTGCGCCGTATCGGTGGCTTCCTTTGGCTACCTTCACCCGTGGAAAACTTCCTCCACCACTGAGAGATACCAACTTGGGTTTTTGCTCTCTTCCTTTGCGTTCAATCTTACCAACTTGTTTGTCTTTACACCCATGACCATTGAGATGATGAAGCAGAGGCATAAAGTGGAGAGAGAAAATAATATAGGGGAAGAAGTTGGGTGGTCAAAAAATGTAGAAGTTGCAAAGTCAAACCCAAAGCTTGCAGCCATGAATAAGAAGTTTGGTATGATTCATGGATTATCTTCCCTTGCCAATATAATGTCGTTTGGCAGTCTAGCAATACACTCTTGGTACTTGGCAGGTAAAATTGATCTCTGA >Glyma10g01750.2 sequence type=CDS gene model=Glyma10g01750 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTTGTGGTTTAGAAATCTGCCGCGGCATCAGTTTGGGAACCTGCAAAGCAAGATGTTTCCGGCGTATTTCTCGATGGTGGGTGTCTGCTGCGCCGTATCGGTGGCTTCCTTTGGCTACCTTCACCCGTGGAAAACTTCCTCCACCACTGAGAGATACCAACTTGGGTTTTTGCTCTCTTCCTTTGCGTTCAATCTTACCAACTTGTTTGTCTTTACACCCATGACCATTGAGATGATGAAGCAGAGGCATAAAGTGGAGAGAGAAAATAATATAGGGGAAGAAGTTGGGTGGTCAAAAAATGTAGAAGTTGCAAAGTCAAACCCAAAGCTTGCAGCCATGAATAAGAAGTTTGGTATGATTCATGGATTATCTTCCCTTGCCAATATAATGTCGTTTGGCAGTCTAGCAATACACTCTTGGTACTTGGCAGGTAAAATTGATCTCTGA
>Glyma10g01750.1 sequence type=predicted peptide gene model=Glyma10g01750 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGWLSRFITAVAFLAIGVIFSPETLGSKSTTLSTYLKLAHLLCFSTAFGAALWVTFIGGIIMFKNLPRHQFGNLQSKMFPAYFSMVGVCCAVSVASFGYLHPWKTSSTTERYQLGFLLSSFAFNLTNLFVFTPMTIEMMKQRHKVERENNIGEEVGWSKNVEVAKSNPKLAAMNKKFGMIHGLSSLANIMSFGSLAIHSWYLAGKIDL* >Glyma10g01750.2 sequence type=predicted peptide gene model=Glyma10g01750 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MLWFRNLPRHQFGNLQSKMFPAYFSMVGVCCAVSVASFGYLHPWKTSSTTERYQLGFLLSSFAFNLTNLFVFTPMTIEMMKQRHKVERENNIGEEVGWSKNVEVAKSNPKLAAMNKKFGMIHGLSSLANIMSFGSLAIHSWYLAGKIDL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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