Glyma10g01740 - SoyBase

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Report for Sequence Feature Glyma10g01740

Feature Type:	gene_model
Chromosome:	Gm10
Start:	1271778
stop:	1278579
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma10g01740

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G02110	AT	Annotation by Michelle Graham. TAIR10: transcription coactivators \| chr4:935191-940191 FORWARD LENGTH=1329	SoyBase	E_val: 3.00E-116	ISS
GO:0005622	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: intracellular	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0003713	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transcription coactivator activity	SoyBase	N/A	ISS
PTHR13561	Panther	DNA REPLICATION REGULATOR DPB11-RELATED	JGI		ISS
PTHR13561:SF5	Panther	DNA REPLICATION REGULATOR DPB11	JGI		ISS
PF00533	PFAM	BRCA1 C Terminus (BRCT) domain	JGI		ISS
PF00628	PFAM	PHD-finger	JGI		ISS
UniRef100_G7IDS4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: BRCT domain-containing protein n=1 Tax=Medicago truncatula RepID=G7IDS4_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1L7Q7	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1L7Q7_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma10g01740

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma10g01740

Paralog	Evidence	Comments
Glyma02g01680	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma10g01740 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.10g014100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma10g01740

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma10g01740

Limit To All Plant Sequences

>Glyma10g01740.1   sequence type=CDS   gene model=Glyma10g01740   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATGGAAGCCACTTACCCATCGCCAATGTTTCGCGGTGTTCGTTTCGTTCTCCGTGGCTTCAATCCCGTCGCCCAAAACCAGATCCGGTTCAAGCTTGCCAATGGCGGTGGAGTCGACGTAGGACAGTACGGCGGGAGTTGCACGCATGTCATTGTCGATAACGTTGCTTATGACGATCCTGTGTGTGTTGCTGCCAGAAATGATCGGAAGACGGTTGTCACTGCATTGTGGGTTGAACACAGTGCTGATATTGGAATGCCTGTTGATGCTACTTCGGTTATGTACAGACCTCTTAAAGACTTAGATGGAATACCAGGTGCGAAAGATTTGATAATGTGCTTGACTGGTTATCTACGCCAGGATCGGGATGACATTATGACAATGGTTGGCCTAATGGGTGCACAGTTTTCTAAGCCTTTGGTGGCAAACAAGGTTACTCATCTCATATGCTACAAATTTGAAGGAGAGAAGTATGAGCTTGCCAAGAAATTGGGCACAATAAAGTTAGTTAATCATCGTTGGTTGGAAGATTGCTTGAAGGAATGGGTGCTTCTTCCCGAAGACAAATATAACAAGAGTGGTTTTGAACTAGAGATGATGGAGGAAGAGGCTAAGGATTCTGAGCAAGAGGCTGAAGATTCTAAGCTGGGACAATCAGGGGGAAGAAAAAGAAAACAAAGCCCCCTTAGTTCGAAAATTGGTATCGCTGCTACTCCTGGATTGTCCAAATCAGCAACAGAGGCATCAAACGCCTTACCAGATTCTACTGGTCCACAGGTCTTGCCAAATGTCAATAATGGTGAAAACTCTTTAACCGTTCCAGGAAATAAGAGCAGACCTGATCAAGGCTCGAGCTTTCATAATGTTGATGACTCAAAGGTAAGCTATCAGGCTGCTGATATTTCTAGACATTCTACATCATGCCAGTTACCTAACAAATATGTAAAGACCAGTGAGTCTAAGAATGCTGATTCTCCAAAGGCACCTGGCTGCCAGGATCTTGGCAATATGGGAAATACAAATTCATCTGATCAGCAGCCTGATCTGAATGGCGACATCTCAGAGTCTAAGAAGGTGGCAAGTGATTTGAGAGAAACTTCTGCAAGTGCTGCTGGAGTTGCACATTCAAATGAAAAGCTTAGAACTGCAAGTTATTCTAGGAAGAACCAAAAAGGATTTACTCTTCCAAGGATCTTAGATGAAAGCTCAGGTAGAGAAGGCAACAACTGTGATAACAGTAAGGTTCAAAAGGCCAGTGAGGGTGTCAAATCTACCAGTGTTGAAGTTTCTGGGAAAGGAAATGATTTTGTTAAAGATGAGCCAATTAGTTTATTGCCTCAAAAGAGGATAAACAAAGCTTCTTTTACTAAATTAAAATCAAGAAAGAAGACTTCAGTCCCATCAGCTAATGGTAAATCTCAAGGATTAAAAGTGACATCTCAGGTTGATGAGCCACCTGAAGCTGATGACTACTTTTCTATAGGTAAAGATGGTATAAATAACTCAAACACTTGCTTAGTTTCGAAACCTTCAGGCTCTACCTCCAACTCACTGGCATTTGATGAGCTTCTTTCAAGAAATGCAAGCCCAGAATCTGTTCAGTGTGATAATGTCTGTCAGAATTCATCAAAAATGGCTGTTCAGAGCTTAAGTGAGTCTAAAATTAATGGCAAACCTGATATCACAGGTTCTGGAATGCAACAAGTTGGTGGTAATGAAGTAGAGCAACATACTGTCACTAAAAATCTTGATTGTTCATCTCTGGGAAACAAAAAATCATGTAATGTGGAATCTGCTGGTTGTACTAAATTGGATTTAGGCACCGAAGAAAGTAATAAACTGGTTAGCAAATCACCCCGAAAGAAGTCGGTTGCCAAGAGAAGTTTGGGTTCTAAACCTAAAGTAGGTGCCACTGCTAAACAGAAAAAATCACTTTCCCTGACTAAAACTACCCTGCAAGGTGAAGGTGAAACTTTTTCCAGTGGAAGCAAAGAGGTTGCAACTGGTGATGCGAGGATGCATCAGGGATGCCCCCAAATCTTTGATGTTAATAAAACAACAGAGCAAGAAACAGTTAGTAAAAATGCTGGTGACAGAACTGAGTTTTTGGACGATGAAACTGAGGCTCCAGATGACAAATGTGAATATGAGTTAGGAATGGCCCTTGACGAAGACTTGGTTCATCTTTCAAAAAAGCCAGATACAGCAAAAGAAGAGAAGTCAGAAGCAACTTACCCTGCAACAAAATGTGAAGAGGCAATGCCTCCTAAGAATGGCACAAATAAAACTGAAAAACAGAAAACATCTTCACTGGCAGTAAAGCATCAAGCTAGAAAACTTCCTGCTGGTAAAGTCAAGGCCACAGTTAGTAAATATGCAGAAGATGATGGTGACAGAACTGAGCTTGTGGGGGATGAAACCGAGGCTCCAGATGGCAAATGTGAACCCGAGTTACGAATGGCACTCGATGAAGAATCTCATCTTTCAAAAAAATCAGATACAGCAACAGAAGAGAAGTCGGAAGTAATTTGCCCTGAAACAAAATGTGAAGAGCCAATGCCTCCTAAGAAAGGCACAAAAAAAACTGAAAAACAGAAGCCATCTTCACTGGTAGTAAAGAATCAAGCAAGAAAACGTCCTGCTGGTAAAACCAAGGCCAAAGTTGCCAAGGAATTACCAAAATCTATGGCAGTATATGGGGAGAAGATTCCTAATGAGACCGAGCATGAGCCAGAGATAGAAACCATGGAAGAAATGCCCCTTCCTGATGATAAAAGTGACCAGCCAGCCATTCAAAGAAATAAGTCAGAGAATTTTGCTGAAGAGAAGGAGAATAGGCCAATTGATGGAGAGCAGGGCAAAAGCAATGGCAGTTCAACTATTAAATCTAGTGTAAGGACAGCAAAGATCAAGTCTAAGAAATCGGGGCTCAATCCATCTATAACAGAATCTAACACGAGAGTGAAAACTGAAGCCGCATGTTTTATATTAAGTGGGCATCGTCTACAGAGAAAAGAGTTTCAACAAGTAATCAAGCGATTAAAAGGAAGGGTTTGCCGGGATTCTCACCAGTGGTCATATCAGGCGACACACTTCATAGCTCCAGACCCCATACGCAGGACTGAGAAATTTTTTGCTGCTGCTGCATCAGGAAGGTGGATTCTAAAAACTGATTTCCTAACTGCCAGTAGCCAGGCAGGAAAATTGTTGGCAGAGGAGCCTTATGAGTGGCACCAGAATGGTTTCAGTGAGGATGGCACAATTAATATGGAGGCTCCAAGAAAGTGGCGGCTGTTGAAAGAAAGAACAGGTCATGGAGCCTTCTATGGAATGCGTATTGTTGTATACGGCGATTGCATTGCCCCACCTTTGGATACTCTGAAACGTGTCATTAAAGCTGGAGATGGAACAATATTAGCAACTTCTCCTCCTTATACTCGCTTCCTTAGTACAGGAATCGACTATGCTGTAGTTAGCCCTGGCATGCCACGTGTTGACATGTGGGTGCAAGAGTTCTTAAAACATGAGATACCTTGTGTTGTAGCGGACTACTTGGTTGAGTATGTTTGCAAGCCCGGGTTCTCCCTTGAGAGACATGTATTATATGGCACTCATGCTTGGGCAGAGAGATCATTTGATAAACTTAAAAGCAAGGCAGAAGAGATTGTTGAAGAACTCGTTGCTCCTGAGGATTCTGGTGATGATCATGATCATGATATAATTTGCAAAGTATGTGGATCCCGCGATAGAGGAGATGTAATGCTGATTTGTGGTGATGAAAGTGGTTCCGTCGGATGTGGAATCGGTACTCATATCGATTGCTGCGATCCTCCTCTAACACATGTACCTGAGGAAGATTGGTTTTGCCCAAAATGCAGTAGCAACCGAAACTGCTCAAACAATCCCAGTAAAAGGAAAAAGACTGTTTTATCTTCATCAGTGTATGTGAGGTGA

Predicted protein sequences of Glyma10g01740

Limit To All Plant Sequences

>Glyma10g01740.1   sequence type=predicted peptide   gene model=Glyma10g01740   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MMEATYPSPMFRGVRFVLRGFNPVAQNQIRFKLANGGGVDVGQYGGSCTHVIVDNVAYDDPVCVAARNDRKTVVTALWVEHSADIGMPVDATSVMYRPLKDLDGIPGAKDLIMCLTGYLRQDRDDIMTMVGLMGAQFSKPLVANKVTHLICYKFEGEKYELAKKLGTIKLVNHRWLEDCLKEWVLLPEDKYNKSGFELEMMEEEAKDSEQEAEDSKLGQSGGRKRKQSPLSSKIGIAATPGLSKSATEASNALPDSTGPQVLPNVNNGENSLTVPGNKSRPDQGSSFHNVDDSKVSYQAADISRHSTSCQLPNKYVKTSESKNADSPKAPGCQDLGNMGNTNSSDQQPDLNGDISESKKVASDLRETSASAAGVAHSNEKLRTASYSRKNQKGFTLPRILDESSGREGNNCDNSKVQKASEGVKSTSVEVSGKGNDFVKDEPISLLPQKRINKASFTKLKSRKKTSVPSANGKSQGLKVTSQVDEPPEADDYFSIGKDGINNSNTCLVSKPSGSTSNSLAFDELLSRNASPESVQCDNVCQNSSKMAVQSLSESKINGKPDITGSGMQQVGGNEVEQHTVTKNLDCSSLGNKKSCNVESAGCTKLDLGTEESNKLVSKSPRKKSVAKRSLGSKPKVGATAKQKKSLSLTKTTLQGEGETFSSGSKEVATGDARMHQGCPQIFDVNKTTEQETVSKNAGDRTEFLDDETEAPDDKCEYELGMALDEDLVHLSKKPDTAKEEKSEATYPATKCEEAMPPKNGTNKTEKQKTSSLAVKHQARKLPAGKVKATVSKYAEDDGDRTELVGDETEAPDGKCEPELRMALDEESHLSKKSDTATEEKSEVICPETKCEEPMPPKKGTKKTEKQKPSSLVVKNQARKRPAGKTKAKVAKELPKSMAVYGEKIPNETEHEPEIETMEEMPLPDDKSDQPAIQRNKSENFAEEKENRPIDGEQGKSNGSSTIKSSVRTAKIKSKKSGLNPSITESNTRVKTEAACFILSGHRLQRKEFQQVIKRLKGRVCRDSHQWSYQATHFIAPDPIRRTEKFFAAAASGRWILKTDFLTASSQAGKLLAEEPYEWHQNGFSEDGTINMEAPRKWRLLKERTGHGAFYGMRIVVYGDCIAPPLDTLKRVIKAGDGTILATSPPYTRFLSTGIDYAVVSPGMPRVDMWVQEFLKHEIPCVVADYLVEYVCKPGFSLERHVLYGTHAWAERSFDKLKSKAEEIVEELVAPEDSGDDHDHDIICKVCGSRDRGDVMLICGDESGSVGCGIGTHIDCCDPPLTHVPEEDWFCPKCSSNRNCSNNPSKRKKTVLSSSVYVR*

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