SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G02030 | AT | Annotation by Michelle Graham. TAIR10: Vps51/Vps67 family (components of vesicular transport) protein | chr4:892262-897175 FORWARD LENGTH=780 | SoyBase | E_val: 0 | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0030244 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cellulose biosynthetic process | SoyBase | N/A | ISS |
| GO:0042732 | GO-bp | Annotation by Michelle Graham. GO Biological Process: D-xylose metabolic process | SoyBase | N/A | ISS |
| GO:0048193 | GO-bp | Annotation by Michelle Graham. GO Biological Process: Golgi vesicle transport | SoyBase | N/A | ISS |
| GO:0005794 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus | SoyBase | N/A | ISS |
| GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| KOG2346 | KOG | Uncharacterized conserved protein | JGI | ISS | |
| PTHR15954 | Panther | UNCHARACTERIZED | JGI | ISS | |
| PTHR15954:SF4 | Panther | gb def: SPAC3G6.10c protein | JGI | ISS | |
| PF08700 | PFAM | Vps51/Vps67 | JGI | ISS | |
| UniRef100_G7IDQ8 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Fat-free-like protein n=1 Tax=Medicago truncatula RepID=G7IDQ8_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000233C34E | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233C34E related cluster n=1 Tax=unknown RepID=UPI000233C34E | SoyBase | E_val: 0 | ISS |
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Glyma10g01660 not represented in the dataset |
Glyma10g01660 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma02g01610 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.10g013400 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma10g01660.1 sequence type=CDS gene model=Glyma10g01660 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGTGGGAGAAGAAGTAGTACCAATGGACGACAAAGCGAAGAGGATGCGAGATCTGCTATCGAGTTTCTACTCCCCTGACCCTTCCATCTCCAACAACACCTCCAAACACGCTTCTCTCGACGACATCAATTCTACTTCCTTCGATCCCGATCAGTACATGAACATCCTGGCACACAAGTCCAATTTGGAAGGCCTGCTCCAACGCCACGTTGAAATGGCAGCTGAAATCAAGAATCTCGACACCGACTTGCAAATGCTGGTTTACGAGAATTACAACAAGTTCATCAGTGCTACAGACACTATAAAGAGGATGAAAAGTAACATTTCCGGGATGGAGACGAATATGGAGCAGCTTCTTGAGAAGATAATGTCTGTGCAGTCGAGAAGTGACAGTGTCAACACTTCTCTATTTGACAAAAGGGAGCATATTGAGAAACTACATCGGACTTGTAATCTTCTTCGTAAAGTTCAGTTCATATATGACCTACCCGATAGACTAAGCAAGTGCATCAAGTCGGAGGCCTATGCAGATGCAGTCAGGTTTTACATTGGAGCAATGCCAATTTTTAAGGCATATGGAGATTCTTCATTCCGGGATTGTAAACAAGCTTCTGAAGAAGCAATAGCTGTTGTAGTAAAAAACTTGCAGGGGAAGCTATTTTCAGATTCTGAATCAATACAAGTGAGAGCTGATGCAGCAGTGCTTCTTAAGCAGTTGGATTTTCCGGTGAACAATTTGAAGGCAAAGTTATTTGAAAAGTTAGAACAATCTATTACAGACATTCGACTGAACCCTGAAGAAATAAATAATCCTTCAGGGGACCGTTCTACTCATGAGGCAGCTATACATGAATTTGTGGAGGCAGTTTGTGCATTTCGTGTAATATTTCCTGATTCTGAAGAACAATTGGTTAAAGTTGCTGAAGATTTGGTTACCAAGAACTTTGTAATTGCTGAGGAATATGTAAAGACACGGATTTCCCCAGAAGATCTACTTGGTGTTCTTCGAGTTATCTGGAATGACGTGCTCCTGATAGATGAAGTCTTACAGGAAGCAGCTCTCTCTAATCATTCTCTTGAGGCTGCAAAGGTTGTTGTCACGTCGTTTGTTAGAAGTGCATTTTTTCATCTTCTACAAGACATCTCAGATTCCCTCTTACAAATCCTGAAAAAGGAAGGAGCAGAACAGTGCACTCTTGATGTTGTTCTTGATGCAAGTACAAAAGCAGTTCTTCAAGGAGGACTGAATGTGTTGCTGGACTTTCGCAAAATTTTAGATGATGACTCTGGGATCCTAGTTAGATTAAGAGAGTTAATCATTGATTGGGTTCAAGAAGGACTTCAAGAATTTTTTAGGCAACTTGAGGATCAGTTCCTTCTGTTTTCAGGAAGAAATCATTCATCTATTCAAGTACACGGTTTGGCAGAGGGAACTCAAGGTGATAAAGCTTTTGCTGGCCTTGTCCTAGTGCTGGCACAATTGTCTGCTTTCATTGAACAAACCGTCATCCCAAAAGTCACTGAGGAAATAGCTGCTTCCTTTTCTGGTGGTAGTGTTAGAGGCTATGAATCTGGACCTGCCTTTGTTCCTGGAGAAATATGTCGAAAATTTCGGTCAGCTGGTGAAAAATTCTTGCACCTGTACATAAATATGAGAAATCAGAGGGTATCACTTCTCCTGAAGAAGAGGTTTACAACCCCTAATTGGGTTAAGCATAAGGAACCAAGAGAAGTTCATATGTTTGTTGATCTATTTCTTCAAGAGCTTGAAATTATAGTTAACGAAGTGAAGCAGATTTTGCCTCAAGGTAGACGTAAGCACCACAGGACTGATAGTAATGGAAGTAGTGCTTCATCAAGGAGCAATCCCTTGCGGGAGGAGAAACTGGTTAGGTCAAATACTCAAAGGGCAAGGAGCCAGCTTTTGGAAACGCATCTTGCAAAATTGTTTAAGCAGAAAGTTGAAATTTTCACAAAAGTAGAATATACACAGGAGTCTGTTGTTACAACTTTAGTTAAATTGGGCCTTAAAAGTTTTCAAGAATTTGTCCGACTCCAGACTTTTAACCGAAGTGGATTCCAGCAAATTCAATTGGATATCCAGTTCGTAAGGATCCCTTTAAGAGAAATAGTTGAAGATGAAGCTGCAATCGACTTCTTGCTAGATGAGGTGATTGTTGCTACTGCTGAACGGTGTCTAGATCCGATTCCATTGGAGCCTCCCATATTGGACAAACTTATACGAGCAAAGTTGGCTAAAACCGAGGAGCAAAATACAATTTCTTCATAA
>Glyma10g01660.1 sequence type=predicted peptide gene model=Glyma10g01660 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MVGEEVVPMDDKAKRMRDLLSSFYSPDPSISNNTSKHASLDDINSTSFDPDQYMNILAHKSNLEGLLQRHVEMAAEIKNLDTDLQMLVYENYNKFISATDTIKRMKSNISGMETNMEQLLEKIMSVQSRSDSVNTSLFDKREHIEKLHRTCNLLRKVQFIYDLPDRLSKCIKSEAYADAVRFYIGAMPIFKAYGDSSFRDCKQASEEAIAVVVKNLQGKLFSDSESIQVRADAAVLLKQLDFPVNNLKAKLFEKLEQSITDIRLNPEEINNPSGDRSTHEAAIHEFVEAVCAFRVIFPDSEEQLVKVAEDLVTKNFVIAEEYVKTRISPEDLLGVLRVIWNDVLLIDEVLQEAALSNHSLEAAKVVVTSFVRSAFFHLLQDISDSLLQILKKEGAEQCTLDVVLDASTKAVLQGGLNVLLDFRKILDDDSGILVRLRELIIDWVQEGLQEFFRQLEDQFLLFSGRNHSSIQVHGLAEGTQGDKAFAGLVLVLAQLSAFIEQTVIPKVTEEIAASFSGGSVRGYESGPAFVPGEICRKFRSAGEKFLHLYINMRNQRVSLLLKKRFTTPNWVKHKEPREVHMFVDLFLQELEIIVNEVKQILPQGRRKHHRTDSNGSSASSRSNPLREEKLVRSNTQRARSQLLETHLAKLFKQKVEIFTKVEYTQESVVTTLVKLGLKSFQEFVRLQTFNRSGFQQIQLDIQFVRIPLREIVEDEAAIDFLLDEVIVATAERCLDPIPLEPPILDKLIRAKLAKTEEQNTISS*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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