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Report for Sequence Feature Glyma10g01640

Feature Type:gene_model
Chromosome:Gm10
Start:1186043
stop:1187391
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma10g01640
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G62420AT Annotation by Michelle Graham. TAIR10: basic region/leucine zipper motif 53 | chr3:23091844-23092284 REVERSE LENGTH=146 SoyBaseE_val: 7.00E-37ISS
GO:0006355GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0006623GO-bp Annotation by Michelle Graham. GO Biological Process: protein targeting to vacuole SoyBaseN/AISS
GO:0009267GO-bp Annotation by Michelle Graham. GO Biological Process: cellular response to starvation SoyBaseN/AISS
GO:0016192GO-bp Annotation by Michelle Graham. GO Biological Process: vesicle-mediated transport SoyBaseN/AISS
GO:0045893GO-bp Annotation by Michelle Graham. GO Biological Process: positive regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:2000693GO-bp Annotation by Michelle Graham. GO Biological Process: positive regulation of seed maturation SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003677GO-mf Annotation by Michelle Graham. GO Molecular Function: DNA binding SoyBaseN/AISS
GO:0003700GO-mf Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity SoyBaseN/AISS
GO:0005515GO-mf Annotation by Michelle Graham. GO Molecular Function: protein binding SoyBaseN/AISS
GO:0043565GO-mf Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding SoyBaseN/AISS
GO:0046982GO-mf Annotation by Michelle Graham. GO Molecular Function: protein heterodimerization activity SoyBaseN/AISS
PTHR22952Panther CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED JGI ISS
PTHR22952:SF61Panther ATBZIP53 (BASIC REGION/LEUCINE ZIPPER MOTIF 53), D JGI ISS
PF00170PFAM bZIP transcription factor JGI ISS
UniRef100_Q0GPH7UniRef Annotation by Michelle Graham. Best UniRef hit: BZIP transcription factor bZIP59 n=1 Tax=Glycine max RepID=Q0GPH7_SOYBN SoyBaseE_val: 1.00E-104ISS
UniRef100_Q0GPH7UniRef Annotation by Michelle Graham. Most informative UniRef hit: BZIP transcription factor bZIP59 n=1 Tax=Glycine max RepID=Q0GPH7_SOYBN SoyBaseE_val: 1.00E-104ISS

Expression Patterns of Glyma10g01640
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma10g01640
ParalogEvidenceComments
Glyma02g01600 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma10g01640 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.10g013300 Wm82.a2.v1IGC As supplied by JGI

References for Glyma10g01640
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma10g01640
>Glyma10g01640.1   sequence type=CDS   gene model=Glyma10g01640   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTTCGATTCCGCGTCCGGCGAGTTCGGGATCTTCGGAGGGAGGAGGAGATCCGGCTGCGATGGACGAGAGAAAGAGGAAGCGGATGGAGTCGAACCGCGAGTCCGCACGGCGATCGCGGATGAAGAAGCAGAAGCTGCTCGAAGACCTATCCGACGTAGCGAGTCGCCTTCAAGGCGAGAACGTGCGCTTAGCGCAGAGCATAAAGGCGAAGGAGGAAGCGTACGTTGAGATCGAAGCCGCGAACGACATCCTCAGAGCACAGACCATGGAACTCGCCGACCGGTTAAGGTTTCTGAACTCCATTCTCGAGATCGCCGATGAGGTCGGCGGCGGTGGTGAATCCTTCGAGATTCCGCAGATTCCAGACCCTCTCTTCATGCCCTGGCAGATCCCCCACCCTATGATGGCGTCACCTGACATGCTCCTCCATGGAAATCAAGGCCTGTTTGCTTGA
Predicted protein sequences of Glyma10g01640
>Glyma10g01640.1   sequence type=predicted peptide   gene model=Glyma10g01640   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASIPRPASSGSSEGGGDPAAMDERKRKRMESNRESARRSRMKKQKLLEDLSDVASRLQGENVRLAQSIKAKEEAYVEIEAANDILRAQTMELADRLRFLNSILEIADEVGGGGESFEIPQIPDPLFMPWQIPHPMMASPDMLLHGNQGLFA*






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