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Report for Sequence Feature Glyma10g01600

Feature Type:gene_model
Chromosome:Gm10
Start:1168376
stop:1169960
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G61310AT Annotation by Michelle Graham. TAIR10: Cytochrome c oxidase subunit Vc family protein | chr5:24653543-24653737 REVERSE LENGTH=64 SoyBaseE_val: 1.00E-33ISS
GO:0005739GO-cc Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion SoyBaseN/AISS
GO:0005746GO-cc Annotation by Michelle Graham. GO Cellular Compartment: mitochondrial respiratory chain SoyBaseN/AISS
GO:0004129GO-mf Annotation by Michelle Graham. GO Molecular Function: cytochrome-c oxidase activity SoyBaseN/AISS
PF05799PFAM Cytochrome c oxidase subunit Vc (COX5C) JGI ISS
UniRef100_G7IDQ0UniRef Annotation by Michelle Graham. Most informative UniRef hit: Cytochrome c oxidase subunit 5C n=1 Tax=Medicago truncatula RepID=G7IDQ0_MEDTR SoyBaseE_val: 2.00E-35ISS
UniRef100_I1L7P7UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1L7P7_SOYBN SoyBaseE_val: 2.00E-38ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma02g01570 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments
Glyma.10g012800 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma10g01600.1   sequence type=CDS   gene model=Glyma10g01600   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTGGTCCTAGGATTGCCCATGCTACCTTGAAAGGTCCGAGTGTGGTTAAGGAGATCATAATTGGAATAACACTTGGCTTAGCTGCTGGTGGTGTGTGGAAGATGCACCACTGGAATGAACAGAGGAAAACCAGGACCTTCTACGATTTACTGGAAAAGGGTGAGATTACTGTTGTTGCAGAGGAACAGTGA

>Glyma10g01600.1   sequence type=predicted peptide   gene model=Glyma10g01600   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAGPRIAHATLKGPSVVKEIIIGITLGLAAGGVWKMHHWNEQRKTRTFYDLLEKGEITVVAEEQ*







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